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Cellular Engineering - Papers


Selected recent publications

  1. Worden, L.,  Schwartz, I. B., Bianco, S., Ackley, S.,  Lietman, T.M., and Porco, T. (2017). "Hamiltonian analysis of subcritical stochastic epidemic dynamics", Computational and Mathematical Methods in Medicine, in press. (pdf)
  2. Hughes, A., Mornin, J. D., Biswas, S. K., Bauer, D. P., Bianco, S., Gartner, Z. J. (2017). "Quantius: Generic, high-fidelity human annotation of scientific images at 10 5-clicks-per-hour", http://www.biorxiv.org/content/early/2017/07/15/164087. (pdf)
  3. Tamisier, L., Rousseau, E., Barraille, S., Nemouchi, G., Szadkowski, M., Mailleret, L., Grognard, F., Fabre, F., Moury, B., Palloix A. (2017). "Quantitative trait loci in pepper control the effective population size of two RNA viruses at inoculation", Journal of General Virology, http://10.1099/jgv.0.000835.
  4. Biswas, S. K., Milanfar, P. (2017). "Linear Support Tensor Machine with LSK Channels: Pedestrian Detection in Thermal Infrared Images," in IEEE Transactions on Image Processing , vol.PP, no.99, pp.1-1, http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=7931588&isnumber=4358840. (pdf)
  5. Kaufman, J. H., Elkins, C. A., Davis, M., Weis, A. M., Huang, B. C., Mammel, M. K., ... Bianco, S., & Weimer, B. C. (2017). Insular microbiogeography. http://arxiv.org/abs/1703.07454. (pdf)
  6. Nieddu, G. T., Billings, L., Kaufman, J. H., Forgoston, E., & Bianco, S. (2017). Extinction pathways and outbreak vulnerability in a stochastic Ebola model, Journal of The Royal Society Interface, http://dx.doi.org/10.1098/rsif.2016.0847. (pdf)
  7. Xiao, Y., Rouzine, I. M., Bianco, S., Acevedo, A., Goldstein, E. F., Farkov, M., … Andino, R. (2016). RNA Recombination Enhances Adaptability and Is Required for Virus Spread and Virulence. Cell Host & Microbe, 19(4), 493–503. http://doi.org/10.1016/j.chom.2016.03.009. (pdf)
  8. Jones, B. A., Lessler, J., Bianco, S., & Kaufman, J. H. (2015). Statistical Mechanics and Thermodynamics of Viral Evolution. PLOS ONE, 10(9), e0137482. Populations and Evolution. http://doi.org/10.1371/journal.pone.0137482.
  9. Hu, K., Bianco, S., Edlund, S., & Kaufman, J. (2015). The Impact of Human Behavioral Changes in 2014 West Africa Ebola Outbreak. In Social Computing, Behavioral-Cultural Modeling, and Prediction (Vol. 9021, pp. 75–84). http://doi.org/10.1007/978-3-319-16268-3_8
  10. Stern, A., Bianco, S., Yeh, M. Te, Wright, C., Butcher, K., Tang, C., … Andino, R. (2014). Costs and Benefits of Mutational Robustness in RNA Viruses. Cell Reports, 1–11. http://doi.org/10.1016/j.celrep.2014.07.011
  11. Li, Z., Bianco, S., Zhang, Z., & Tang, C. (2014). Generic properties of random gene regulatory networks. Quantitative Biology, 1(4), 253–260. http://doi.org/10.1007/s40484-014-0026-6
  12. Hu, K., Thoens, C., Bianco, S., Edlund, S., Davis, M., Douglas, J., & Kaufman, J. H. (2013). The effect of antibody-dependent enhancement, cross immunity, and vector population on the dynamics of dengue fever. Journal of Theoretical Biology, 319, 62–74. http://doi.org/10.1016/j.jtbi.2012.11.021
  13. Forgoston, E., Bianco, S., Shaw, L. B., & Schwartz, I. B. (2011). Maximal sensitive dependence and the optimal path to epidemic extinction. Bulletin of Mathematical Biology, 73(3), 495–514.
  14. Schwartz, I. B., Forgoston, E., Bianco, S., & Shaw, L. B. (2011). Converging towards the optimal path to extinction. Journal of The Royal Society Interface, 8(65), 1699–1707. http://doi.org/10.1098/rsif.2011.0159
  15. Bianco, S., & Shaw, L. B. (2011). Asymmetry in the presence of migration stabilizes multistrain disease outbreaks. Bulletin of Mathematical Biology, 73(1), 248–60. http://doi.org/10.1007/s11538-010-9541-4
  16. Bianco, S., Shaw, L. B., & Schwartz, I. B. (2009). Epidemics with multistrain interactions: The interplay between cross immunity and antibody-dependent enhancement. Chaos, 19(4). http://doi.org/10.1063/1.3270261

 

 




Recent news

10/01/17

Welcome to Cellular Engineering interns Amanda Paulson and Jacob Kimmel!

07/17/17

Congrats to Elsa Rousseau for her recent publication on the Journal of General Virology! (link).

07/07/17

Elsa Rousseau presents her recent work on defective viral particles at the 2017 Ecology and Evolution of Infectious Disease meeting, in Santa Barbara.

06/19/17

Congrats to Sujoy Biswas for his recent publication on the IEEE Transactions on Image Processing! (link).

05/08/17

Simone speaks about viral dynamic at the SIAM Symposium on applications of Dynamical Systems (DS 2017) (abstract here).

05/08/17

Simone publishes an article about Cellular Engineering on www.01net.it (in Italian).

05/05/17

Press release about recent paper about the role of the animal reservoir on the spread of the Ebola virus.

See also:

Healtcare IT News
MedicalXpress
ExecutiveBiz
Clinical Innovation + Technology

04/22/17

Article about Cellular Engineering (and other projects at IBM Almaden) on the Italian newspaper Il Foglio (pdf, in Italian).

02/20/17

Welcome postdoc Elsa Rousseau!

01/16/17

Welcome postdoc Sujoy Biswas!

09/30/16

The Center for Cellular Construction is announced!