Robert J. Prill  Robert J. Prill photo       

contact information

Senior Scientist, Computational Biology & Bioinformatics
Research Staff Member - San Jose, CA

links



2015

Noise-driven causal inference in biomolecular networks.
Robert J Prill, Robert Vogel, Guillermo A Cecchi, Gregoire Altan-Bonnet, Gustavo Stolovitzky
PLoS One 10(6), e0125777, 2015
Abstract

Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics.
Ebrahim Afshinnekoo, Cem Meydan, Shanin Chowdhury, Dyala Jaroudi, Collin Boyer, Nick Bernstein, Julia M Maritz, Darryl Reeves, Jorge Gandara, Sagar Chhangawala, Sofia Ahsanuddin, Amber Simmons, Timothy Nessel, Bharathi Sundaresh, Elizabeth Pereira, Ellen
Cell Syst 1(1), 72--87, 2015
Abstract


2013

BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters.
Hailiang Huang, Sandeep Tata, Robert J Prill
Bioinformatics 29(1), 135--136, 2013
Abstract


2012

Wisdom of crowds for robust gene network inference.
Daniel Marbach, James C Costello, Robert Kuffner, Nicole M Vega, Robert J Prill, Diogo M Camacho, Kyle R Allison, Manolis Kellis, James J Collins, Gustavo Stolovitzky
Nat Methods 9(8), 796--804, 2012
Abstract


2011

Crowdsourcing network inference: the DREAM predictive signaling network challenge.
Robert J Prill, Julio Saez-Rodriguez, Leonidas G Alexopoulos, Peter K Sorger, Gustavo Stolovitzky
Sci Signal 4(189), mr7, 2011
Abstract


2010

Revealing strengths and weaknesses of methods for gene network inference.
Daniel Marbach, Robert J Prill, Thomas Schaffter, Claudio Mattiussi, Dario Floreano, Gustavo Stolovitzky
Proc Natl Acad Sci U S A 107(14), 6286--6291, 2010
Abstract

Towards a rigorous assessment of systems biology models: the DREAM3 challenges.
Robert J Prill, Daniel Marbach, Julio Saez-Rodriguez, Peter K Sorger, Leonidas G Alexopoulos, Xiaowei Xue, Neil D Clarke, Gregoire Altan-Bonnet, Gustavo Stolovitzky
PLoS One 5(2), e9202, 2010
Abstract


2009

Lessons from the DREAM2 Challenges.
Gustavo Stolovitzky, Robert J Prill, Andrea Califano
Ann N Y Acad Sci1158, 159--195, 2009
Abstract


2005

Dynamic properties of network motifs contribute to biological network organization.
Robert J Prill, Pablo A Iglesias, Andre Levchenko
PLoS Biol 3(11), e343, 2005
Abstract