Daniel E. (Dan) Platt  Daniel E. (Dan) Platt photo       

contact information

Biological Research
Thomas J. Watson Research Center, Yorktown Heights, NY USA
  +1dash914dash945dash1388

links

Professional Associations

Professional Associations:  American Association for the Advancement of Sciences  |  American Physical Society  |  American Society of Human Genetics


2009

Geographical Structure of the Y-chromosomal Genetic Landscape of the Levant: A coastal-inland contrast
M El-Sibai, D E Platt, M Haber, Y Xue, S C Youhanna, R S Wells, H Izaabel, M F Sanyoura, H Harmanani, M A Bonab, others
Annals of human genetics 73(6), 568--581, John Wiley \& Sons, 2009


2008

Similarity searching of molecules based upon descriptor vectors characterizing molecular regions
M C Pitman, D E Platt
US Patent 7,356,415, 2008 - Google Patents, Google Patents
US Patent 7,356,415

Identifying genetic traces of historical expansions: Phoenician footprints in the Mediterranean
P A Zalloua, D E Platt, M El Sibai, J Khalife, N Makhoul, M Haber, Yali Xue, Hassan Izaabel, Elena Bosch, Susan M. Adams, Eduardo Arroyo, Ana Mar{\i}a L{\'o}pez-Parra, Mercedes Aler, Antonia Picornell, Misericordia Ramon, Mark A. Jobling, David Comas, Jau
The American Journal of Human Genetics83, 1--10, 2008

Identifying genetic traces of historical expansions: Phoenician footprints in the Mediterranean
P A Zalloua, D E Platt, M El Sibai, J Khalife, N Makhoul, M Haber, Y Xue, H Izaabel, E Bosch, S M Adams, others
The American Journal of Human Genetics 83(5), 633--642, Elsevier, 2008

Y-chromosomal diversity in Lebanon is structured by recent historical events
P A Zalloua, Y Xue, J Khalife, N Makhoul, L Debiane, D E Platt, A K Royyuru, R J Herrera, D F S Hernanz, J Blue-Smith, others
The American Journal of Human Genetics 82(4), 873--882, Elsevier, 2008

PCA and clustering reveal alternate mtDNA phylogeny of N and M clades
Gabriela Alexe, Satya R. Vijaya, M Seller, Daniel E. Platt, T Bhanot, S Hui, M. Tanaka, A. J. Levine, Gyan Bhanot
Journal of Molecular Evolution 67(5), 465-487, 2008

Y-chromosome diversity in Lebanon is structured by recent historical events
PA Zalloua, Y Xue, J Khalife, N Makhoul, L Debiane, DE Platt, AK Royyuru, RJ Herrera, DF Hernanz, J Blue-Smith, RS Wells, D Comas, J Bertranpetit, C Tyler-Smith
Am J. Human Genetics82, 873-82, 2008


2006

Inferring Common Origins from mtDNA
A Royyuru, G Alexe, D Platt, R Vijaya-Satya, L Parida, S Rosset, G Bhanot
Research in Computational Molecular Biology, pp. 246--247, 2006

Data mining and clinical data repositories: Insights from a 667,000 patient data set
I M Mullins, M S Siadaty, J Lyman, K Scully, C T Garrett, W Greg Miller, R Muller, B Robson, C Apte, S Weiss, I Rigoutsos, D Platt, S Cohen, W Knaus
Computers in biology and medicine 36(12), 1351--1377, 2006


Data mining and clinical data repositories: insights from 667,000 patient data set
IM Mullins, MS Siadaty, J Lymman, K Scully, CT Garrett, WG Miller, R Muller, B Robson, C Apte, S Weiss, I Rigoutsos, DE Platt, S Cohen, WA Knaus
Comput Biol Med 36(12), 1351-77, 2006


2003

The web server of IBM's Bioinformatics and Pattern Discovery group
T Huynh, I Rigoutsos, L Parida, D Platt, T Shibuya
Nucleic acids research 31(13), 3645, Oxford Univ Press, 2003

In silico pattern-based analysis of the human cytomegalovirus genome
I Rigoutsos, J Novotny, T Huynh, S T Chin-Bow, L Parida, D Platt, D Coleman, T Shenk
Journal of virology 77(7), 4326, Am Soc Microbiol, 2003

Global secondary structure packing angle bias in proteins
D E Platt, C Guerra, G Zanotti, I Rigoutsos
Proteins Structure Function and Genetics 53(2), 252--261, 2003


2002

Dictionary-driven protein annotation
I Rigoutsos, T Huynh, A Floratos, L Parida, D Platt
Nucleic Acids Research 30(17), 3901, Oxford Univ Press, 2002

Method and apparatus for mapping components of descriptor vectors for molecular complexes to a space that discriminates between groups
M C Pitman, D E Platt
US Patent 6,349,265, 2002 - Google Patents, Google Patents
US Patent 6,349,265

Method and apparatus for mapping components of descriptor vectors to a space that discriminates between groups
D E Platt
US Patent 6,408,321, 2002 - Google Patents, Google Patents
US Patent 6,408,321


2001

QSAR in grossly underdetermined systems
Daniel E. Platt, Laxmi Parida, Aris Floratos, Isidore Rigoutsos
IBM Journal of Research and Development 45(3), 533-544, 2001

An Output-Sensitive Flexible Pattern Discovery Algorithm
Laxmi Parida, Isidore Rigoutsos, Daniel E. Platt
Combinatorial Pattern Matching, 12th Annual Symposium, Springer, 2001

Are mitochondria mesoscopic?
D E Platt
Biophysical Chemistry 91(3), 245--252, Elsevier, 2001


2000

The emergence of pattern discovery techniques in computational biology
I Rigoutsos, A Floratos, L Parida, Y Gao, D Platt
Metabolic Engineering 2(3), 159--177, Elsevier, 2000

Pattern discovery on character sets and real-valued data: linear bound on irredundant motifs and an efficient polynomial time algorithm
L Parida, I Rigoutsos, A Floratos, D Platt, Y Gao
Proceedings of the eleventh annual ACM-SIAM symposium on Discrete algorithms, pp. 297--308, 2000


1999

Molecular moment similarity between several nucleoside analogs of thymidine and thyidine.
B. David Silverman, Mike C. Pitman, Daniel E. Platt
J. Biomol Struct Dyn 16(6), 1169-75, 1999

Representation and matching of small flexible molecules in large databases of 3D molecular information
Isidore Rigoutsos, Daniel E. Platt, Andrea Califano, B. David Silverman
Pattern discovery im biomolecular data: tools, techniques, and applications, Oxford University Press, 1999


1998

System and method for comparative molecular moment analysis (CoMMA)
D E Platt, B D Silverman
US Patent 5,784,294, 1998 - Google Patents, Google Patents
US Patent 5,784,294

Molecular moment similarity between clozapine and substituted [(4-phenylpiperazinyl)-methyl] benzamides: Selective dopamine D4 agonists
BD Silverman, M C Pitman, D E Platt, I Rigoutsos
Journal of computer-aided molecular design 12(6), 525--532, Springer, 1998

Comparative molecular moment analysis (CoMMA)
B D Silverman, D E Platt, M Pitman, I Rigoutsos
Perspectives in Drug Discovery and Design12, 183--196, Springer, 1998


1996

Registration, orientation, and similarity of molecular electrostatic potentials through multipole matching
D E Platt, B D Silverman
Journal of Computational Chemistry 17(3), 358--366, John Wiley \& Sons, 1996


Flexible 3D-Substructure Matching and Novel Conformer Derivation in Very Large Databases of Molecular Information
I Rigoutsos, D Platt, A Califano
IBM Research Division. Yorktown Heights, NY: TJ Watson Research Center, 1996


1994

Percolation of a simulated metalic film on a porous substrate: the copper-polyimide interface
B. David Silverman, Daniel E. Platt
Phys Rev E 49(2), 1029-1039, 1994

Modeling the thermal-to-plasma transitions for Cu photoablation
Akos Vertes, Russell W. Dreyfus, Daniel E. Platt
IBM Journal of Research and Development 38(1), 3-10, 1994


1993

Consistent scaling of multifractal measures: multifractal spatial correlations
D E Platt, F Family
Physical Review E 47(4), 2281--2288, APS, 1993


1992


A modern analysis of the Stern--Gerlach experiment
D E Platt
American Journal of Physics60, 306, 1992


1990


576 BOOKS
M J Haims, D E Platt
IBM SYSTEMS JOURNAL 29(4), 19, 1990


1989

Fractal pattern formation in human retinal vessels
F Family, B R Masters, D E Platt
Physica D: Nonlinear Phenomena 38(1-3), 98--103, Elsevier, 1989


1988



1987

Deterministic growth model of pattern formation in dendritic solidification
Fereydoon Family, Daniel E. Platt
J. Phys. A.20, L1177-L1183, 1987

Scaling group formulation of multifractals
D E Platt, F Family
Physical review letters 58(26), 2786--2789, APS, 1987


1986

Distribution and Entropy of Clusters in Growth Models
Tamas Vicsek, Fereydoon Family, Janos Kertesz, Daniel E. Platt
Europhysics Letters 2(11), 823-828, 1986