Research Areas
Additional Information
Research Team
- Ajay Royyuru
- Aris Tsirigos
- Binquan Luan
- Bob Danani
- Bruce Berne
- Chad Peck
- Chao Wang
- Christine Kretz
- Dan He
- Dan Platt
- David Haws
- Deqiang Wang
- Erhan Bilal
- Filippo Utro
- Frank Suits
- Guillermo Cecchi
- Gustavo Stolovitzky
- Hongbo Peng
- Irina Rish
- James Kelly
- James Kozloski
- Jeremy Rice
- John Wagner
- Laxmi Parida
- Mark Nelson
- Matthew Downton
- Michael Hehenberger
- Niina Haiminen
- Pablo Meyer Rojas
- Payel Das
- Raquel Norel
- Ravi Rao
- Ruhong Zhou
- Seung-gu Kang
- Stephen Moore
- Sung-Wook Nam
- Tien Huynh
- Venkat Balagurusamy
- Viatcheslav Gurev
- Yann Astier
Meet us at
- SIAM Conference on Computational Science & Engineering (CSE13)
- The Center for Simulational Physics Annual Workshop, Univ of Georgia
Career Opportunities
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Postdoctoral Scientist -
Biomolecular Modeling
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Postdoctoral Scientist -
Systems Biology
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Postdoctoral Scientist -
Bionanotechnology
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Postdoctoral Scientist -
Bionanotechnology
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Summer Intern -
Computational Biology
- in IBM Research
Additional Resources
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Life Sciences
Solutions
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Healthcare
Solutions
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University Relations
Collaboration, Awards and Fellowships
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Jobs, News, Publications, and Seminars (RSS)
Project Name
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Research at the interface of Information Technology and Biology
We pursue basic and exploratory research at the interface of information technology and biology. Information technology plays a vital role in enabling new science and discovery in biology.
Advances in high throughput and platform technologies in biology present an unprecedented challenge in scale, management, and analysis of biological data. Advances in computing architecture and scale are enabling simulations of complex biological processes at various organizational levels from atomic to cellular and beyond.
Research Groups & Projects
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Biometaphorical Computing: Neuroimaging, Neuroanalysis, and Modeling the Brain.
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Blue Gene: Science with Petascale to Exascale Computing.
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Computational Genomics: Making sense of the Data Explosion in Genomics.
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DNA Transistor: Nanotechnology for DNA Sequencing.
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Functional Genomics & Systems Biology: Transcriptomics, Reverse Engineering of Networks, Multiscale modeling of Biological Systems.
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Genographic: Human Migratory History from Genetic Data. Collaboration with National Geographic Society.
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Melbourne Collaboratory: Collaboration with University of Melbourne and VLSCI.
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Soft Matter Theory and Simulation: Simulations of Biomolecular Systems, Protein Science, Proteomics.
Computational Biology Center
IBM 100 Icons of Progress
In the News
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A Cure for the Valentine's Blues? Livermore Supercomputer Seeks to Mend Broken Hearts
Energy.gov website
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sbv IMPROVER Launches Species Translation Challenge
Bio-IT World
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Play “TheCure” Game and help learning the rules Breast Cancer Prognosis
TheCure is a “gamification” of Sage/DREAM7 Breast Cancer Prognostics Challenge
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A Computational Model of an Anticancer Nanoparticle
MIT Technology Review
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Author Profile: Gustavo Stolovitzky
Nature Methods
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Computers breakthrough in battle against bugs
Australian Broadcasting Corporation, TV News
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IBM's Killer Idea: The $100 DNA-Sequencing Machine
The Atlantic
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Early humans' route out of Africa 'confirmed'
BBC News
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10 World Changing Ideas of 2010 (includes DNA Transistor)
Scientific American
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Tech meets Bio: International biology machine
Nature Medicine
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Roche and IBM Partner to Develop Nanopore Next-Gen Sequencing System
Bio-IT World
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I.B.M. Pursues $1,000 Genome Sequencing
New York Times
- All News
Recent Publications
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UV-radiation Induced Disruption of Dry-Cavities in Human γD-crystallin Results in Decreased Stability and Faster Unfolding.
Xia Z, Yang Z, Huynh T, King JA, Zhou R.
Sci Rep. 2013 Mar 27;3:1560. doi: 10.1038/srep01560. -
Ultrametric networks: a new tool for phylogenetic analysis.
Apostolico A, Comin M, Dress A, Parida L.
Algorithms Mol Biol. 2013 Mar 5;8(1):7. [Epub ahead of print] -
Seeking the Wisdom of Crowds Through Challenge-Based Competitions in Biomedical Research.
Costello JC, Stolovitzky G.
Clin Pharmacol Ther. 2013 Feb 20. doi: 10.1038/clpt.2013.36. [Epub ahead of print] -
Metallofullerenol Gd@C(82)(OH)(22) distracts the proline-rich-motif from putative binding on the SH3 domain.
Kang SG, Huynh T, Zhou R.
Nanoscale. 2013 Feb 19. [Epub ahead of print] -
Critical assessment of automated flow cytometry data analysis techniques.
Aghaeepour N, Finak G; The FlowCAP Consortium, Dougall D, Khodabakhshi AH, Mah P, Obermoser G, Spidlen J, Taylor I, Wuensch SA, Bramson J, Eaves C, Weng AP, Iii ES, Ho K, Kollmann T, Rogers W, De Rosa S, Dalal B, Azad A, Pothen A, Brandes A, Bretschneider H, Bruggner R, Finck R, Jia R, Zimmerman N, Linderman M, Dill D, Nolan G, Chan C, Khettabi FE, O'Neill K, Chikina M, Ge Y, Sealfon S, Sugár I, Gupta A, Shooshtari P, Zare H, De Jager PL, Jiang M, Keilwagen J, Maisog JM, Luta G, Barbo AA, Májek P, Vilček J, Manninen T, Huttunen H, Ruusuvuori P, Nykter M, McLachlan GJ, Wang K, Naim I, Sharma G, Nikolic R, Pyne S, Qian Y, Qiu P, Quinn J, Roth A; The DREAM Consortium, Meyer P, Stolovitzky G, Saez-Rodriguez J, Norel R, Bhattacharjee M, Biehl M, Bucher P, Bunte K, Di Camillo B, Sambo F, Sanavia T, Trifoglio E, Toffolo G, Dimitrieva S, Dreos R, Ambrosini G, Grau J, Grosse I, Posch S, Guex N, Keilwagen J, Kursa M, Rudnicki W, Liu B, Maienschein-Cline M, Manninen T, Huttunen H, Ruusuvuori P, Nykter M, Schneider P, Seifert M, Strickert M, Vilar JM, Hoos H, Mosmann TR, Brinkman R, Gottardo R, Scheuermann RH.
Nat Methods. 2013 Feb 10. doi: 10.1038/nmeth.2365. [Epub ahead of print] - All publications
Upcoming Seminar
Speaker
: Thomas Gregor Princeton University
Seminar
: Segmentation by the numbers
When
: 1 - 2 pm on Wed. May 22, 2013 in Yorktown 20-001



