Toward a Coherent Virtual Cell Model: Probing Biological World-Model Coherence in Transcriptomic Foundation Models
- Noa Moriel
- Yishai Shimoni
- et al.
- 2025
- NeurIPS 2025
Publications
9 results for Michael Morris Danziger
DOES YOUR MODEL UNDERSTAND GENES? A MODALITY-AGNOSTIC BENCHMARK OF GENE PROPERTIES
- Yoav Kan-Tor
- Michael Morris Danziger
- et al.
- 2025
- ISMB 2025
Transcriptomic Foundation Model Evaluation: Quantifying Expression Level Discrimination Through Null Sample Testing
- Noa Moriel
- Michael Morris Danziger
- et al.
- 2025
- ISMB 2025
Improving Transcriptomic Foundation Models Through Gene-Level Error Analysis and Adaptive Masking
- Michael Morris Danziger
- Bharath Dandala
- et al.
- 2025
- ISMB 2025
Regress, Don't Guess: A Regression-like Loss on Number Tokens for Language Models
- Jonas Zausinger
- Lars Pennig
- et al.
- 2025
- ICML 2025
Regress, Don’t Guess – A Regression-like Loss on Number Tokens for Language Models
- Jonas Zausinger
- Lars Pennig
- et al.
- 2024
- NeurIPS 2024
Identifying Putative Gene Markers: A Biomedical Foundation Model-based Approach for Cell Type Annotation
- Uri Kartoun
- Akira Koseki
- et al.
- 2024
- ISMB 2024
Improving Health-Status Classification for Epithelial Cells of Inflammatory Bowel Disease using a Transcriptomic Biomedical Foundation Model
- 2024
- ISMB 2024
Cross Dataset Verification of Cell Type Annotation using a Transcriptomic Biomedical Foundation Model: Inflammatory Bowel Disease Use Case
- 2024
- ISMB 2024