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Health Informatics Publications



2019

Toward an accelerated adoption of data-driven findings in medicine
Kartoun U
Medicine, Health Care and Philosophy: A European Journal, 2019


2018

Prevalence of Chlamydia trachomatis-Specific Antibodies before and after Mass Drug Administration for Trachoma in Community-Wide Surveys of Four Communities in Nepal
Sarah E Gwyn, Lingwei Xiang, Ram Prasad Kandel, Deborah Dean, Manoj Gambhir, Diana L Martin
The American journal of tropical medicine and hygiene 98(1), 216--220, The American Society of Tropical Medicine and Hygiene, 2018

A Systematic Review and Meta-analysis of the Factors Associated With Nonadherence and Discontinuation of Statins Among People Aged≥ 65 Years
Richard Ofori-Asenso, Avtar Jakhu, Andrea J Curtis, Ella Zomer, Manoj Gambhir, Maarit Jaana Korhonen, Mark Nelson, Andrew Tonkin, Danny Liew, Sophia Zoungas
The Journals of Gerontology: Series A, 2018

Risk factors for infectiousness of patients with tuberculosis: a systematic review and meta-analysis
YA Melsew, TN Doan, M Gambhir, AC Cheng, E McBryde, JM Trauer
Epidemiology \& Infection, 1--9, Cambridge University Press, 2018

Agrochemicals increase risk of human schistosomiasis by supporting higher densities of intermediate hosts
Neal T Halstead, Christopher M Hoover, Arathi Arakala, David J Civitello, Giulio A Leo, Manoj Gambhir, Steve A Johnson, Nicolas Jouanard, Kristin A Loerns, Taegan A McMahon, others
Nature communications 9(1), 837, Nature Publishing Group, 2018

Annotation of skin image using learned feature representation
Mani Abedini, Rajib Chakravorty, Rahil Garnavi, Munawar Hayat
US Patent 9,886,758

A Two-Stage Model to Predict Surgical Patients' Lengths of Stay from an Electronic Patient Database
Ashwani Kumar, Hamideh Anjomshoa
IEEE Journal of Biomedical and Health Informatics, 2018

Development of an algorithm to identify patients with physician-documented insomnia
Kartoun U, Aggarwal R, Beam A, Pai J, Chatterjee A, Fitzgerald T, Kohane I, Shaw S
Scientific Reports (Nature Publishing Group), 2018

Unsupervised Clustering of Mammograms for Outlier Detection and Breast Density Estimation
Tal Tlusty, Guy Amit, Rami Ben-Ari
International Conference on Pattern Recognition (ICPR), 2018
(Accpeted)

Results from the second year of a collaborative effort to forecast influenza seasons in the United States
Matthew Biggerstaff, Michael Johansson, David Alper, Logan C. Brooks, Prithwish Chakraborty, David C. Farrow, Sangwon Hyun, Sasikiran Kandula, Craig McGowan, Naren Ramakrishnan, Roni Rosenfeld, Jeffrey Shaman, Rob Tibshirani, Ryan J. Tibshirani, Alessandr
Epidemics, 2018

Opportunities and Challenges in Developing Deep Learning Models Using Electronic Health Records Data: a systematic review
Cao Xiao, Edward Choi, Jimeng Sun
Journal of the American Medical Informatics Association (JAMIA), 2018

 SYSTEMS AND USER INTERFACES FOR ENHANCEMENT OF DATA UTILIZED IN MACHINE-LEARNING BASED MEDICAL IMAGE REVIEW , IL820170016US01
A. Zlotnik, A. Akselrod-Ballin, and S. Ravid with Merge,

Evaluating speech-based question–answer interactions for elder-care services
H. Takagi, M. Ohno, M. Kobayashi, T. Nakada
IBM Journal of Research and Development 62(1), 6:1--6:10, IBM, 2018

Monitoring Daily Physical Conditions of Older Adults Using Acoustic Features: A Preliminary Result
Y. Yamada, K. Shinkawa, T. Takase, A. Kosugi, K. Fukuda, M. Kobayashi
Stud Health Technol Inform, pp. 301--305, IOS Press, 2018

Cognitive data sharing (IBM patent application)
Kartoun U, Liu X, Lu F

Chest x-ray generation and data augmentation for cardiovascular abnormality classification
Madani, Ali and Moradi, Mehdi and Karargyris, Alexandros and Syeda-Mahmood, Tanveer
Medical Imaging 2018: Image Processing, pp. 105741M

Segmentation of anatomical structures in cardiac CTA using multi-label V-Net
Tang, Hui and Moradi, Mehdi and El Harouni, Ahmed and Wang, Hongzhi and Veni, Gopalkrishna and Prasanna, Prasanth and Syeda-Mahmood, Tanveer
Medical Imaging 2018: Image Processing, pp. 1057407

Inferring body position in a scan
Gur, Yaniv and Moradi, Mehdi and Syeda-Mahmood, Tanveer F and Wang, Hongzhi
US Patent App. 15/220,932
Abstract

De-identify my patient data or you can't have it (letter to the editor)
Kartoun U
Communications of the ACM (July), 2018

Identifying and extracting stimulus-response variables from electronic health records (IBM patent application)
Kartoun U, Ng K, Chiu A, Lascaleia M, Park Y, Honour M, Das A, Tang P

An Efficient Multi-Scale Data Representation Method for Lung Nodule False Positive Reduction Using Convolutional Neural Networks
Dario Augusto Borges Oliveira, Matheus Palhares Viana
IEEE International Symposium on Biomedical Imaging (ISBI), 2018

Interpretable drug target prediction using deep neural representation
Yingkai Gao, Achille Fokoue, Heng Luo, Arun Iyengar, Sanjoy Dey, Ping Zhang
Proceedings of IJCAI-ECAI-2018

Finding Precise Causal Multi-Drug-Drug Interaction for Adverse Drug Reactions.
Sanjoy Dey, Ping Zhang, Mohamed Ghalwash

A method and system for integrating multiple adverse drug reaction risk scores from heterogeneous drug safety causality models. Invention
Ping Zhang, Sanjoy Dey, Katherin Shen, Achille Fokoue

PREDICTING DRUG-DISEASE INTERACTIONS FOR DRUG SAFETY
Ping Zhang, Sanjoy Dey, Katherin Shen, Achille Fokoue

Interpretable Bio-medical Link Prediction Using Deep Neural Representation.
Sanjoy Dey, Ping Zhang, Achille Fokoue, Yingkai Gao

PREDICTING DRUG-FOOD INTERACTIONS THROUGH LARGE-SCALE SIMILARITY-BASED LINK PREDICTION
Ping Zhang, Sanjoy Dey, Katherin Shen, Achille Fokoue

Identifying Chemical Substructures Associated with Adverse Drug Reactions using Deep Learning Framework
Sanjoy Dey, Heng Luo, Achille Fokoue, Jianying Hu, Ping Zhang
International Conference on Intelligent Biology and Medicine 2018

Predicting primate sources of long-term Zika virus spillover infection
Barbara A. Han, Subhabrata Majumdar, Flavio P. Calmon, Benjamin Glicksberg, Raya Horesh, Abhishek Kumar, Adam Perer, Elisa von Marschall, Dennis Wei, Aleksandra Mojsilovic, Kush R. Varshney
submitted, 2018

Stable Genes in Comparative Transcriptomics
N Haiminen, L Parida
US Patent 10,083,275

Collaborative Human-AI (CHAI): Evidence-Based Interpretable Melanoma Classification in Dermoscopic Images
Noel C. F. Codella, Chung-Ching Lin, Allan Halpern, Michael Hind, Rogerio Feris, John R. Smith
Workshop on Interpretability of Machine Intelligence in Medical Image Computing at MICCAI, 2018
Abstract

Tunneling Junction To Distinguish Targeted DNA Segment
J Bai, N Haiminen, L Parida, G Stolovitzky
US Patent 10,041,930

Analysis of factors associated with extended recovery time after colonoscopy
Eschenfeldt PC, Kartoun U, Heberle CR, Kong CY, Nishioka NS, Ng K, Kamarthi S, Hur C
PLOS ONE, 2018

Integrating Multiple Adverse Drug Reaction Risk Scores From Heterogeneous Drug Safety Causality Models
Ping Zhang, Sanjoy Dey, Katherine Shen, Achille Fokoue

Finding Precise Causal Multi-Drug-Drug Interactions for Adverse Drug Reaction Analysis
Sanjoy Dey, Ping Zhang, Mohamed Ghalwash

Chemical Compound Discovery Using Machine Learning Technologies
Yan Li, Heng Luo, Wendy Cornell, Ping Zhang

Interpretable Bio-Medical Link Prediction Using Deep Neural Representation
Achille Fokoue, Kyle Yingkai Gao, Heng Luo, Sanjoy Dey, Ping Zhang

Predicting Interactions Between Drugs and Diseases
Ping Zhang, Achille Fokoue, Sanjoy Dey, Katherine Shen

Predicting Interactions Between Drugs and Foods
Ping Zhang, Achille Fokoue, Sanjoy Dey, Katherine Shen

Determining Potential Cancer Therapeutic Targets by Joint Modeling of Survival Events
Zhaonan Sun, Zach Shahn, Ping Zhang, Fei Wang, Jianying Hu

Diagnosing Failures of Cloud Management Actions
R. Ranchal, P. Jayachandran
48th IEEE/IFIP DSN, 2018

Healthcare Risk Analytics Method
US pending

Analysis of factors associated with extended recovery time after colonoscopy
Eschenfeldt PC, Kartoun U, Heberle CR, Kong CY, Nishioka NS, Ng K, Kamarthi S, Hur C
PLOS ONE, 2018


JUS-IT: An Innovative Solution for Integrated Care Management for Child Welfare and the Police.
Kassler, W, Snowdon J, Fernitz T, Vogeler M.
European Social Services Conference (ESSC)., 2018
Abstract

Segmentation of Both Diseased and Healthy Skin from Clinical Photographs in a Primary Care Setting.
Noel Codella, Daren Anderson, Tyler Philips, Anthony Porto, Kevin Massey, Jane Snowdon, Rogerio Feris, John R Smith.
40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC'18)., 2018
Abstract


2017

Designing Decision-Support Technologies for Patient-Generated Data in Type 1 Diabetes
Sun, Si and Costello, Kaitlin L
AMIA Annual Symposium Proceedings, pp. 1645, 2017

StressHacker: Towards Practical Stress Monitoring in the Wild with Smartwatches
Tian Hao, Kimberly Walter, Marion Ball, Henry Chang, Si Sun, Xinxin Zhu
AMIA Annual Symposium Proceedings (Nominated for Distinguished Paper), 2017

Putting patient data into action: the use of patient-generated health data in clinical care and research
Austin, Robin R and Kim, Katherine and Beckjord, Ellen and Hesse, Bradford W and Smith, Ashley Wilder and Gorin, Sherri Sheinfeld and Wright, Julie A and Breland, Jessica Y and Tanaka, Miho and Hsueh, Pei-Yun Sabrina
ANNALS OF BEHAVIORAL MEDICINE, pp. S16--S17, 2017


Interpretable Clustering for Prototypical Patient Understanding: A Case Study of Hypertension and Depression Behavioral Profiling in National Health and Nutrition Examination Survey Data.
Hsueh PS, S Das
AMIA 2017 Podium presentation



DrugPathSeeker: Interactive UI for Exploring Drug-ADR Relation via Pathways
Janu Verma, Heng Luo, Jianying Hu, Ping Zhang
IEEE Pacific Visualization Symposium (PacificVis), 2017
Abstract

A Method to Predict and Generate Hypotheses on Relevant Drug Targets and Mechanisms for Adverse Drug Reactions
Heng Luo, Ping Zhang, Achille Fokoue-Nkoutche, Jianying Hu

Assessment of the Status of Measles Elimination in the United States, 2001--2014
Paul A Gasta\~naduy, Prabasaj Paul, Amy Parker Fiebelkorn, Susan B Redd, Ben A Lopman, Manoj Gambhir, Gregory S Wallace
American journal of epidemiology 185(7), 562--569, Oxford University Press, 2017

Emerging Infectious Diseases and Blood Safety: Modeling the Transfusion-Transmission Risk
Philip Kiely, Manoj Gambhir, Allen C Cheng, Zoe K McQuilten, Clive R Seed, Erica M Wood
Transfusion medicine reviews 31(3), 154--164, Elsevier, 2017

Emerging infectious disease agents and blood safety in Australia: spotlight on Zika virus
Philip Kiely, Erica M Wood, Manoj Gambhir, Allen C Cheng, Zoe K McQuilten, Clive R Seed
The Medical Journal of Australia 206(10), 455--460, 2017

Making sense of consensus: comparative modelling of malaria interventions
Manoj Gambhir, Chathurika Hettiarachchige
The Lancet Global Health 5(7), e638--e639, Elsevier, 2017

Agrochemical pollution increases risk of human exposure to schistosome parasites
Neal Halstead, Christopher Hoover, Arathi Arakala, David J Civitello, Giulio De Leo, Manoj Gambhir, Steven A Johnson, Kristin A Loerns, Taegan A McMahon, Karena Nguyen, others
bioRxiv, 161901, Cold Spring Harbor Laboratory, 2017

O14. 4 Oropharyngeal transmission of neisseria gonorrhoeae among men who have sex with men and potential impacts of mouthwash
Lei Zhang, David G Regan, Eric Pf Chow, Manoj Gambhir, Vincent Cornelisse, Andrew Grulich, Jason Ong, David A Lewis, Jane Hocking, Christopher K Fairley
BMJ Publishing Group Ltd, 2017

Targeted human papillomavirus vaccination for young men who have sex with men in Australia yields significant population benefits and is cost-effective
Lei Zhang, David G Regan, Jason J Ong, Manoj Gambhir, Eric PF Chow, Huachun Zou, Matthew Law, Jane Hocking, Christopher K Fairley
Vaccine 35(37), 4923--4929, Elsevier, 2017

Neisseria gonorrhoeae transmission among men who have sex with men: an anatomical site-specific mathematical model evaluating the potential preventive impact of mouthwash
Lei Zhang, David G Regan, Eric PF Chow, Manoj Gambhir, Vincent Cornelisse, Andrew Grulich, Jason Ong, David A Lewis, Jane Hocking, Christopher K Fairley
Sexually transmitted diseases 44(10), 586--592, LWW, 2017

Adherence and Persistence among statin users aged 65 years and over: a systematic review and meta-analysis
Richard Ofori-Asenso, Avtar Jakhu, Ella Zomer, Andrea J Curtis, Maarit Jaana Korhonen, Mark Nelson, Manoj Gambhir, Andrew Tonkin, Danny Liew, Sophia Zoungas
The Journals of Gerontology: Series A, 2017

neisseria gonorrhoeae: An Anatomical Site-specific Mathematical Model Evaluating the Potential Preventive Impact of Mouthwash Transmission Among Men Who Have Sex With Men: An Anatomical Site-specific Mathematical Model Evaluating the Potential Preventive
Lei Zhang, David G Regan, Eric Pf Chow, Manoj Gambhir, Vincent Cornelisse, Andrew Grulich, Jason Ong, David A Lewis, Jane Hocking, Christopher K Fairley
Sexually Transmitted Diseases 44(10), 586--592, Sexually Transmitted Diseases, 2017

SERO-SURVEILLANCE IS AN INFORMATIVE INDICATOR OF TRACHOMA TRANSMISSION INTENSITY
Amy Pinsent, Michael T White, Manoj Gambhir, Diana L Martin
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, pp. 214--214, 2017

SHARED SANITATION FACILITIES AND TWO PATHWAYS OF DIARRHEAL DISEASE TRANSMISSION: A MODELING STUDY
Matthew R Just, Sheng Li, Kelly K Baker, Manoj Gambhir, Isaac Chun-Hai Fung
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, pp. 561--561, 2017

CAN WE ELIMINATE TRACHOMA AS A PUBLIC HEALTH PROBLEM BY 2020?
Amy Pinsent, Manoj Gambhir
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, pp. 530--530, 2017

Exploiting local and generic features for accurate skin lesions classification using clinical and dermoscopy imaging
Zongyuan Ge, Sergey Demyanov, Behzad Bozorgtabar, Mani Abedini, Rajib Chakravorty, Adrian Bowling, Rahil Garnavi
Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on, pp. 986--990

Investigating deep side layers for skin lesion segmentation
Behzad Bozorgtabar, Zongyuan Ge, Rajib Chakravorty, Mani Abedini, Sergey Demyanov, Rahil Garnavi
Biomedical Imaging (ISBI 2017), 2017 IEEE 14th International Symposium on, pp. 256--260

Skin disease recognition using deep saliency features and multimodal learning of dermoscopy and clinical images
Zongyuan Ge, Sergey Demyanov, Rajib Chakravorty, Adrian Bowling, Rahil Garnavi
International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 250--258, 2017

A methodology and system to identify chemical substructures that have significant association with adverse drug reactions
Sanjoy Dey, Heng Luo, Jianying Hu, Ping Zhang

Mechanism of action derivation for drug candidate adverse drug reaction predictions
Janu Verma, Heng Luo, Jianying Hu, Ping Zhang

A method to predict and generate hypotheses on relevant drug targets and mechanisms for adverse drug reactions
Heng Luo, Ping Zhang, Achille B. Fokoue-Nkoutche, Jianying Hu

Efficient experimental design and feature analysis method for drug discovery
Yan Li, Heng Luo, Wendy Cornell, Ping Zhang

A Novel Data-Driven Framework for Risk Characterization and Prediction from Electronic Medical Records: A Case Study of Renal Failure
Prithwish Chakraborty, Vishrawas Gopalakrishnan, Sharon MH Alford, Faisal Farooq
Unpublished, 2017
arXiv preprint arXiv:1711.11022, accepted in NIPS ML4H 2017 workshop. Early draft presented to AMIA 2017

A framework for evaluating epidemic forecasts
Farzaneh Sadat Tabataba, Prithwish Chakraborty, Naren Ramakrishnan, Srinivasan Venkatramanan, Jiangzhuo Chen, Bryan Lewis, Madhav Marathe
BMC infectious diseases 17(1), 345, BioMed Central, 2017

Temporal Topic Modeling to Assess Associations between News Trends and Infectious Disease Outbreaks
Saurav Ghosh, Prithwish Chakraborty, Elaine O Nsoesie, Emily Cohn, Sumiko R Mekaru, John S Brownstein, Naren Ramakrishnan
Scientific reports7, 40841, Nature Publishing Group, 2017



A system and method for detection and classification of multiple classes of abnormal findings in medical images, IL8-2016-0179
A. Akselrod-Ballin and L. Karlinsky,

Wafer-scale integration of sacrificial nanofluidic chips for detecting and manipulating single DNA molecules
Wang, Chao and Nam, Sung-Wook and Cotte, John M and Jahnes, Christopher V and Colgan, Evan G and Bruce, Robert L and Brink, Markus and Lofaro, Michael F and Patel, Jyotica V and Gignac, Lynne M and others
Nature communications8, 14243, Nature Publishing Group, 2017
Abstract

Effects of cesium ion implantation on the mechanical and electrical properties of porous SiCOH low-k dielectrics
Li, Weiyi and Pei, Dongfei and Benjamin, Daniel and Chang, Jen-Yung and King, Sean W and Lin, Qinghuang and Shohet, J Leon
Journal of Vacuum Science & Technology A: Vacuum, Surfaces, and Films 35(6), 061506, AVS, 2017
Abstract

Specificity of the Framingham Heart Failure Signs and Symptoms: Bridging the Gap Between Epidemiological Research and Clinical Practice
Law, Heather and Dey, Sanjoy and Stewart, Walter
Journal of Patient-Centered Research and Reviews 4(3), 162, Aurora Health Care, Inc., 2017
Abstract

Added Value from Secondary Use of Person Generated Health Data in Consumer Health Informatics
P-Y Hsueh, Y-K Cheung, S Dey, KK Kim, FJ Martin-Sanchez, SK Petersen, T Wetter
Yearbook of medical informatics 26(01), 160--171, Georg Thieme Verlag KG, 2017

Making Sense of Patient-Generated Health Data for Interpretable Patient-Centered Care: The Transition from" More" to" Better".
PS Hsueh, S Dey, S Das, T Wetter
Studies in health technology and informatics245, 113--117, 2017

Identifying Chemical Substructures Associated With Adverse Drug Reactions
Sanjoy Dey, Heng Luo, Achille Fokoue-Nkoutche, Jianying Hu, Ping Zhang

Estimating personalized drug responses from real world evidence.
Sanjoy Dey, Ping Zhang

Near real-time surveillance for Guillain-Barre syndrome after influenza vaccination among the Medicare population, 2010/11 to 2013/14
Sandhu, Sukhminder K and Hua, Wei and MaCurdy, Thomas E and Franks, Riley L and Avagyan, Armen and Kelman, Jeffrey and Worrall, Christopher M and Ball, Robert and Nguyen, Michael
Vaccine 35(22), 2986--2992, Elsevier, 2017
Abstract

A Bayesian approach for predicting neotropical primate reservoirs of Zika virus
Subhabrata Majumdar, Dennis Wei, Adam Perer, Benjamin Glicksberg, Aleksandra Mojsilovic, Kush R. Varshney, Barbara A. Han
International Symposium on Business and Industrial Statistics (ISBIS), 2017

Cognitive Disease Hunter: Developing automated pathogen feature extraction from scientific literature
Timothy NeCamp, Prasanna Sattigeri, Dennis Wei, Emily Ray, Youssef Drissi, Ananya Poddar, Diwakar Mahajan, Sarah Bowden, Barbara A. Han, Aleksandra Mojsilovic, Kush R. Varshney
Data Science for Social Good Conference, pp. 1-6, 2017

Exploring the causal relationships between initial opioid prescriptions and outcomes
Jinghe Zhang, Vijay Iyengar, Dennis Wei, Bhanukiran Vinzamuri, Hamsa S. Bastani, Alexander R. Macalalad, Anne E. Fischer, Gigi Yuen-Reed, Aleksandra Mojsilovic, Kush R. Varshney
AMIA Workshop on Data Mining for Medical Informatics, pp. 1-6, 2017

OM-2017: Proceedings of the Twelfth International Workshop on Ontology Matching
Shvaiko, Pavel and Euzenat, J{\'e}r{\^o}me and Jim{\'e}nez-Ruiz, Ernesto and Cheatham, Michelle and Hassanzadeh, Oktie
OM 2017-12th International Workshop on Ontology Matching, pp. 1--233

Large-scale structural and textual similarity-based mining of knowledge graph to predict drug--drug interactions
Abdelaziz, Ibrahim and Fokoue, Achille and Hassanzadeh, Oktie and Zhang, Ping and Sadoghi, Mohammad
Web Semantics: Science, Services and Agents on the World Wide Web44, 104--117, Elsevier, 2017

Estimating Personalized Drug Responses From Real World Evidence
Sanjoy Dey, Ping Zhang


2016

An Socio-Technical Approach to Securing Health Informatics
Bian Yang, Hsueh, P.S., Steinar Pedersen, Richard Guest, Ashish Kundu
Medical Informatics European Annual Conference 2016: Health  Exploring Complexity (HEC 2016).

Putting User-Generated Data in Action: Improving Interpretability for Clinical and Consumer Informatics.
Hsueh, P.S., S. Dey, X. Zhu, Bian Yang, Y-K Cheung and Thomas Wetter
Medical Informatics European Annual Conference 2016: Health  Exploring Complexity (HEC 2016)

Patient-Generated Health Data in Action.
Austin, Robin and Lai, Albert and Hsueh, Pei-Yun
AMIA, 2016

Transforming Patient-generated Data for Wellness and Biomedical Research: From Behavioral Sensing to Decision Support.
Hsueh, Pei-Yun Sabrina and Peterson, Susan and Mart{\'\i}n-S{\'a}nchez, Fernando Jos{\'e} and Kim, Katherine K and Demiralp, {\c{C}}agatay
AMIA, 2016

Reduction of Feature Space for Extracting Events from Medical Data
Kun Lin, Ping Zhang, Gigi Yuen, Jianying Hu

Abstract

Identifying and investigating unexpected response to treatment: a diabetes case study
Ozery-Flato, Michal and Ein-Dor, Liat and Parush-Shear-Yashuv, Naama and Aharonov, Ranit and Neuvirth, Hani and Kohn, Martin S and Hu, Jianying
Big data 4(3), 148--159, Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA, 2016
Abstract

Identifying and investigating unexpected response to treatment: a diabetes case study
Ozery-Flato, Michal and Ein-Dor, Liat and Parush-Shear-Yashuv, Naama and Aharonov, Ranit and Neuvirth, Hani and Kohn, Martin S and Hu, Jianying
Big data 4(3), 148--159, Mary Ann Liebert, Inc. 140 Huguenot Street, 3rd Floor New Rochelle, NY 10801 USA, 2016

Data-Driven Modeling of Electronic Health Record Data to Predict Prediagnostic Heart Failure in Primary Care
Ng, Kenney and Stewart, Walter F and deFilippi, Christopher and Dey, Sanjoy and Byrd, Roy J and Steinhubl, Steven R and Daar, Zahra and Law, Heather and Pressmnan, Alice R and Hu, Jianying
Journal of Patient-Centered Research and Reviews 3(3), 200, Aurora Health Care, Inc., 2016
Abstract

Exportations of symptomatic cases of MERS-CoV infection to countries outside the Middle East
Cristina Carias, Justin J O’Hagan, Amy Jewett, Manoj Gambhir, Nicole J Cohen, Yoni Haber, Nicki Pesik, David L Swerdlow
Emerging infectious diseases 22(4), 723, Centers for Disease Control and Prevention, 2016

Enhanced antibiotic distribution strategies and the potential impact of facial cleanliness and environmental improvements for the sustained control of trachoma: a modelling study
Amy Pinsent, Matthew J Burton, Manoj Gambhir
BMC medicine 14(1), 71, BioMed Central, 2016

Influence of parity and sexual history on cytomegalovirus seroprevalence among women aged 20--49 years in the USA
Tatiana M Lanzieri, Deanna Kruszon-Moran, Manoj Gambhir, Stephanie R Bialek
International Journal of Gynecology \& Obstetrics 135(1), 82--85, 2016

Ebola virus disease and social media: A systematic review
Isaac Chun-Hai Fung, Carmen Hope Duke, Kathryn Cameron Finch, Kassandra Renee Snook, Pei-Ling Tseng, Ana Cristina Hernandez, Manoj Gambhir, King-Wa Fu, Zion Tsz Ho Tse
American journal of infection control 44(12), 1660--1671, Elsevier, 2016

Mathematical Modelling of Trachoma Transmission, Control and Elimination
Amy Pinsent, Isobel M Blake, Maria-Gloria Bas\'a\~nez, Manoj Gambhir
Advances in parasitology, pp. 1--48, Academic Press, 2016

Estimation of severe Middle East respiratory syndrome cases in the Middle East, 2012--2016
Justin J O’Hagan, Cristina Carias, Jessica M Rudd, Huong T Pham, Yonat Haber, Nicki Pesik, Martin S Cetron, Manoj Gambhir, Susan I Gerber, David L Swerdlow
Emerging infectious diseases 22(10), 1797, Centers for Disease Control and Prevention, 2016

Targeting pediatric versus elderly populations for norovirus vaccines: a model-based analysis of mass vaccination options
Molly K Steele, Justin V Remais, Manoj Gambhir, John W Glasser, Andreas Handel, Umesh D Parashar, Benjamin A Lopman
Epidemics17, 42--49, Elsevier, 2016

Gender-based differences in water, sanitation and hygiene-related diarrheal disease and helminthic infections: a systematic review and meta-analysis
Varadan Sevilimedu, Keisha D Pressley, Kassandra R Snook, Jamesa V Hogges, Maria D Politis, Jessica K Sexton, Carmen H Duke, Blake A Smith, Lena C Swander, Kelly K Baker, others
Transactions of The Royal Society of Tropical Medicine and Hygiene 110(11), 637--648, Oxford University Press, 2016

P066 Transmission of Neisseria gonorrhoeae among men who have sex with men: An anatomical site-specific mathematical model and impact of mouthwash
Lei Zhang, David Regan, Eric Chow, Vincent Cornelisse, Manoj Gambhir, Jane Hocking, Christopher Fairley
BMJ Publishing Group Ltd, 2016

Classification of dermoscopy patterns using deep convolutional neural networks
Sergey Demyanov, Rajib Chakravorty, Mani Abedini, Alan Halpern, Rahil Garnavi
Biomedical Imaging (ISBI), 2016 IEEE 13th International Symposium on, pp. 364--368

Dermatologist-Like Feature Extraction from Skin Lesion for Improved Asymmetry Classification in PH\^2 Database
Rajib Chakravorty, Sisi Liang, Mani Abedini, Rahil Garnavi
38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2016

Multi-scale classification based lesion segmentation for dermoscopic images
Mani Abedini, Noel Codella, Rajib Chakravorty, Rahil Garnavi, David Gutman, Brian Helba, John R Smith
Engineering in Medicine and Biology Society (EMBC), 2016 IEEE 38th Annual International Conference of the, pp. 1361--1364

Automatic Eye Type Detection in Retinal Fundus Image Using Fusion of Transfer Learning and Anatomical Features
Pallab Kanti Roy, Rajib Chakravorty, Suman Sedai, Dwarikanath Mahapatra, Rahil Garnavi
Digital Image Computing: Techniques and Applications (DICTA), 2016 International Conference on, pp. 1--7

Proteome profiling in lung injury after hematopoietic stem cell transplantation
Bhargava, Maneesh and Viken, Kevin J and Dey, Sanjoy and Steinbach, Michael S and Wu, Baolin and Jagtap, Pratik D and Higgins, LeeAnn and Panoskaltsis-Mortari, Angela and Weisdorf, Daniel J and Kumar, Vipin and others
Biology of Blood and Marrow Transplantation 22(8), 1383--1390, Elsevier, 2016
Abstract

Early Detection of Heart Failure Using Electronic Health Records
Ng, Kenney and Steinhubl, Steven R and Dey, Sanjoy and Stewart, Walter F and others
Circulation: Cardiovascular Quality and Outcomes 9(6), 649--658, Am Heart Assoc, 2016
Abstract

A data mining approach to determine sepsis guideline impact on inpatient mortality and complications
Pruinelli, Lisiane and Yadav, Pranjul and Hangsleben, Andrew and Johnson, Jakob and Dey, Sanjoy and McCarty, Maribet and Kumar, Vipin and Delaney, Connie W and Steinbach, Michael and Westra, Bonnie L and others
AMIA Summits on Translational Science Proceedings2016, 194, American Medical Informatics Association
Abstract

Characterizing Physicians Practice Phenotype from Unstructured Electronic Health Records
Sanjoy Dey, Yajuan Wang, Roy J Byrd, Kenney Ng, Steven R Steinhubl, others
AMIA Annual Symposium Proceedings, pp. 514, 2016
Abstract

Paradoxical Hypersusceptibility of Drug-resistant Mycobacteriumtuberculosis to $eta$-lactam Antibiotics
Cohen, Keira A and El-Hay, Tal and Wyres, Kelly L and Weissbrod, Omer and Munsamy, Vanisha and Yanover, Chen and Aharonov, Ranit and Shaham, Oded and Conway, Thomas C and Goldschmidt, Yaara and others
EBioMedicine9, 170--179, Elsevier, 2016
Abstract


2015

Effective patient adherence management with patient-generated data.
Hsueh, P.S., M. Ball, M. Marschollek, F. J. Martin Sanchez, C. Patrovian, V. Patel.
The 15th World Congress on Medical and Health Informatics (MEDINFO 2015)

Building structured personal health records from photographs of printed medical records
Xiang Li, Gang Hu, Xiaofei Teng, Guotong Xie
American Medical Informatics Association Annual Symposium (AMIA), 2015

Early detection of heart failure with varying prediction windows by structured and unstructured data in electronic health records
Wang, Yajuan and Ng, Kenney and Byrd, Roy J and Hu, Jianying and Ebadollahi, Shahram and Daar, Zahra and Steinhubl, Steven R and Stewart, Walter F and others
Engineering in Medicine and Biology Society (EMBC), 2015 37th Annual International Conference of the IEEE, pp. 2530--2533
Abstract

Time-varying Risk Profiling from Health Sensor Data
Yajuan Wang, Yu Cheng, Jianying Hu

Can oral vitamin D prevent the cardiovascular diseases among migrants in Australia? Provider perspective using Markov modelling
Thilanga Ruwanpathirana, Alice Owen, Andre Renzaho, Ella Zomer, Manoj Gambhir, Christopher M Reid
Clinical and Experimental Pharmacology and Physiology 42(6), 596--601, 2015

Short-term forecasting of the prevalence of trachoma: expert opinion, statistical regression, versus transmission models
Fengchen Liu, Travis C Porco, Abdou Amza, Boubacar Kadri, Baido Nassirou, Sheila K West, Robin L Bailey, Jeremy D Keenan, Anthony W Solomon, Paul M Emerson, others
PLoS neglected tropical diseases 9(8), e0004000, Public Library of Science, 2015

Evaluating Ebola vaccine trials: insights from simulation.
JR Pulliam, Steve E Bellan, Manoj Gambhir, Lauren Ancel Meyers, Jonathan Dushoff
The Lancet. Infectious diseases 15(10), 1134--1134, NIH Public Access, 2015

Typhoid transmission: A historical perspective on mathematical model development
Iurii Bakach, Matthew R Just, Manoj Gambhir, Isaac Chun-Hai Fung
Transactions of The Royal Society of Tropical Medicine and Hygiene 109(11), 679--689, Oxford University Press, 2015

Correction: Short-term Forecasting of the Prevalence of Trachoma: Expert Opinion, Statistical Regression, versus Transmission Models
Fengchen Liu, Travis C Porco, Abdou Amza, Boubacar Kadri, Baido Nassirou, Sheila K West, Robin L Bailey, Jeremy D Keenan, Anthony W Solomon, Paul M Emerson, others
PLoS neglected tropical diseases 9(9), e0004129, Public Library of Science, 2015

Possible changes in the transmissibility of trachoma following MDA and transmission reduction: implications for the GET2020 goals
Manoj Gambhir, Amy Pinsent
Parasites \& vectors 8(1), 530, BioMed Central, 2015

Modelling the distribution and transmission intensity of lymphatic filariasis in sub-Saharan Africa prior to scaling up interventions: integrated use of geostatistical and mathematical modelling
Paula Moraga, Jorge Cano, Rebecca F Baggaley, John O Gyapong, Sammy M Njenga, Birgit Nikolay, Emmanuel Davies, Maria P Rebollo, Rachel L Pullan, Moses J Bockarie, others
Parasites \& vectors 8(1), 560, BioMed Central, 2015

Estimating the Future Impact of a Multi-Pronged Intervention Strategy on Ocular Disease Sequelae Caused by Trachoma: A Modeling Study
Manoj Gambhir, Nicholas C Grassly, Matthew J Burton, Anthony W Solomon, Hugh R Taylor, David C Mabey, Isobel M Blake, Mar\'\ia-Gloria Bas\'a\~nez
Ophthalmic epidemiology 22(6), 394--402, Taylor \& Francis, 2015

Estimating ebola treatment needs, United States
Gabriel Rainisch, Jason Asher, Dylan George, Matt Clay, Theresa L Smith, Christine Kosmos, Manjunath Shankar, Michael L Washington, Manoj Gambhir, Charisma Atkins, others
Emerging infectious diseases 21(7), 1273, Centers for Disease Control and Prevention, 2015

Impact of impaired health-related quality of life and obesity on the risk of knee and hip replacement for osteoarthritis
Y Wang, S Hussain, J Shaw, D Magliano, A Wluka, S Graves, M Gambhir, F Cicuttini
Osteoarthritis and Cartilage23, A349--A350, Elsevier, 2015

Impact Of Impaired Health-related Quality Of Life And Obesity On The Risk Of Knee And Hip Replacement For Osteoarthritis
S Hussain, Y Wang, J Shaw, D Magliano, A Wluka, S Graves, M Gambhir, F Cicuttini
Internal Medicine Journal45, 16, 2015

Incidence of pediatric and adult herpes zoster in an era of varicella and herpes zoster vaccines
Rafael Harpaz, Jessica Leung, Manoj Gambhir
Open Forum Infectious Diseases, pp. 1052, 2015

The Impact of Age and Sex on Herpes Zoster Incidence in Children and Young Adults: More Questions Than Answers
Rafael Harpaz, Jessica Leung, Manoj Gambhir
Open Forum Infectious Diseases, 2015

Automated Pipeline for Assistive Annotation in Dermoscopy Images
M Abedini, R. Chakravorty, R. Garnavi, N. Codella, J.R. Smith, D.A. Gutman, M.A. Marchetti, A.A. Marghoob, A. Halpern
IEEE Eng. in Medicine and Biology Society, 2015

Ultrasound RF time series for classification of breast lesions
Uniyal, Nishant and Eskandari, Hani and Abolmaesumi, Purang and Sojoudi, Samira and Gordon, Paula and Warren, Linda and Rohling, Robert N and Salcudean, Septimiu E and Moradi, Mehdi
IEEE transactions on medical imaging 34(2), 652--661, IEEE, 2015
Abstract



Modelling trajectories for diabetes complications
Yadav, Pranjul and Pruinelli, Lisiane and Hangsleben, Andrew and Dey, Sanjoy and Hauwiller, Katherine and Westra, Bonnie L and Delaney, Connie W and Kumar, Vipin and Steinbach, Michael and Simon, Gyorgy J
Proceedings of the 4th Workshop on Data Mining for Medicine and Healthcare. 2015 SIAM International Conference on Data Mining
Abstract

Measuring life: sensors and analytics for precision medicine (Plenary Paper)
S. Harrer
Proc. SPIE 9518, Bio-MEMS and Medical Microdevices II, 951802, 2015.

Precision Medicine on Cancer Treatment: A Joint Matrix Factorization Approach
Ping Zhang, Filippo Utro, Fei Wang, Jianying Hu
AIME Workshop on Matrix Computations for Biomedical Informatics (MCBI), 2015
Abstract

Label Propagation Prediction of Drug-Drug Interactions Based on Clinical Side Effects
Ping Zhang, Fei Wang, Jianying Hu, Robert Sorrentino
Scientific Reports, Nature Publishing Group, 2015
Abstract

Towards Computational Drug Repositioning: A Comparative Study of Single-task and Multi-task Learning
Ping Zhang, Zhaonan Sun, Fei Wang, Jianying Hu
American Medical Informatics Association Annual Symposium (AMIA), Abstract, 2015
Abstract

Show Me Your Evidence -- an Automatic Method for Context Dependent Evidence Detection
Ruty Rinott, Mitesh Khapra, Carlos Alzate, Lena Dankin, Ehud Aharoni, and Noam Slonim
EMNLP, 2015


Early Detection of Heart Failure with Varying Prediction Windows by Structured and Unstructured Data in Electronic Health Records
Wang Y, Ng K, Byrd R, Hu J, Ebadollahi S, Daar Z, deFilippi C, Steinhubl SR, Stewart WF
IEEE Engineering in Medicine and Biology Society (EMBS) 2015

Curating and Integrating Data from Multiple Sources to Support Healthcare Analytics.
Ng K, Kakkanatt C, Benigno M, Thompson C, Jackson M, Cahan A, Zhu X, Zhang P, Huang P
Stud Health Technol Inform. 2015;216:1056.

Personalized Predictive Modeling and Risk Factor Identification using Patient Similarity
Ng K, Sun J, Hu J, Wang F
AMIA Jt Summits Transl Sci Proc. 2015 Mar 25;2015:132-6.

Prescription Extraction from Clinical Notes: Towards Automating EMR Medication Reconciliation.
Wang Y, Steinhubl SR, Defilippi C, Ng K, Ebadollahi S, Stewart WF, Byrd RJ.
AMIA Jt Summits Transl Sci Proc. 2015 Mar 25;2015:188-93.

Early Detection of Heart Failure Using Structured and Unstructured Information in Electronic Health Records
Wang Y, Ng K, Byrd RJ, Ebadollahi S, Stewart WF
AMIA Jt Summits Transl Sci 2015

Physician Documentation Behaviors in Electronic Health Records as a Potential Source of Noise for Early Detection of Heart Failure
Wang Y, Ng K, Hu J, Byrd RJ, Steinhubl SR, deFilippi C, Stewart WF
American Heart Association 2015 Scientific Sessions

Data Driven Modeling of Electronic Health Record Data to Detect Pre-Diagnostic Heart Failure in Primary Care
Ng K, Stewart WF, deFilippi C, Wang Y, Byrd R, Steinhubl SR, Hu J, Daar Z, Law H, Hu J
American Heart Association 2015 Scientific Sessions

Automatic Anatomical Shape Correspondence and Alignment Using Mesh Features
Tal Darom, Yaniv Gur, Chen Hajaj, Yosi Keller
International Symposium on Biomedical Imaging (ISBI), 2015

Synthesizing analytic evidences to refine care Pathways
Haifeng Liu, Xiang Li, Yiqin Yu, Jing Mei, Guotong Xie, Adam Perer, Fei Wang, Jianying Hu
Medical Informatics Europe Conference (MIE), 2015

Outcome-driven evaluation metrics for treatment recommendation systems
Jing Mei, Haifeng Liu, Xiang Li, Yiqin Yu, Guotong Xie
Medical Informatics Europe Conference (MIE), 2015

Analysis of care pathway variation patterns in patient records
Xiang Li, Jing Mei, Haifeng Liu, Yiqin Yu, Guotong Xie, Jianying Hu, Fei Wang
Medical Informatics Europe Conference (MIE), 2015

A decision fusion framework for treatment recommendation systems
Jing Mei, Haifeng Liu, Xiang Li, Guotong Xie, Yiqin Yu
World Congress on Health and Biomedical Informatics (MEDINFO), 2015

VoroGraph: Visualization Tools for Epidemic Analysis
Cody Dunne, Michael Muller, Nicola Perra, Mauro Martino
2015
Abstract   Demo at CHI '15 Interactivity

Label-free screening of single biomolecules through resistive pulse sensing technology for precision medicine applications (invited, special issue 'DNA Sequencing')
S. Harrer, S. C. Kim, C. Schieber, S. Kannam, N. Gunn, S. Moore, D. Scott, R. Bathgate, S. Skafidas, J. M. Wagner
Nanotechnology 26(18), 182502, 2015

Nano-fluidic field effective device to control DNA transport through the same, US Patent 8,940,148 B2 issued
S. Harrer, A. Afzali-Ardakani, B. Luan, G. J. Martyna, D. M. Newns, H. Peng, S. Polonsky, S. Rossnagel, G. Stolovitzky

DNA sequencing using multiple metal layer structure with different organic coatings forming different transient bondings to DNA, US Patent 8,986,524 issued
S. Harrer, A. Afzali-Ardakani, B. Luan, H. Peng, S. M. Rossnagel, A. K. Royyuru, G. Stolovitzky, P. S. Waggoner

Host Trait Prediction of Metagenomic Data for Topology-based Visualization
L. Parida, N. Haiminen, D. Haws, J. Suchodolski
Lecture Notes in Computer Science 8956, 134-149 , Springer, 2015
Abstract


Automated planning of breast radiotherapy using cone beam CT imaging
Guy Amit, Thomas G Purdie
Medical Physics 42(2), 770-779, AIP, 2015

Selecting Optimum Cloud Availability Zones by Learning User Satisfaction Levels
Merve Unuvar, Stefania Tosi, Yurdaer N Doganata, Malgorzata Gosia Steinder, Asser N Tantawi
IEEE Transactions on Services Computing, 8(2), 199--211, IEEE, 2015

Experiments using Automated Sample Plan Selection for OPC Modelling
Ramya Viswanathan, Om Jaiswal, Nathalie Casati, Amr Abdo, James Oberschmidt, Josef Watts and Maria Gabrani
in Optical Microlithography XXVII, Kafai Lai (Ed.), Proceedings of SPIE, 2015

Topology and context-based pattern extraction using line-segment Voronoi diagrams
Sandeep Kumar Dey, Panagiotis Cheilaris, Nathalie Casati, Maria Gabrani and Evanthia Papadopoulou
in Design-Process-Technology Co-optimization for Manufacturability IX, Proceedings of SPIE, 2015

Nearest Neighbor based i-Vector Normalization for Robust Speaker Recognition under Unseen Channel Conditions
W. Zhu, S. Sadjadi and J. Pelecanos
IEEE ICASSP, 2015

UNIFORM SEARCH, NAVIGATION AND COMBINATION OF HETEROGENEOUS DATA
Jason B Ellis, Oktie Hassanzadeh, Michael J Ward
US Patent 20,150,052,125

A data-driven approach to prostate cancer detection from dynamic contrast enhanced MRI
Nandinee Fariah Haq, Piotr Kozlowski, Edward C Jones, Silvia D Chang, S Larry Goldenberg, Mehdi Moradi
Computerized Medical Imaging and Graphics 41(April), 37-45, Elsevier, 2015

Automated Problem List Generation from Electronic Medical Records in IBM Watson
Murthy Devarakonda, Ching-Huei Tsou
Innovative Applications of Artificial Intelligence (IAAI-15), 2015

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge
K. Rhrissorrakrai, V. Belcastro, E. Bilal, R. Norel, C. Poussin, C. Mathis, R. H. Dulize, N. V. Ivanov, L. Alexopoulos, J. J. Rice, M. C. Peitsch, G. Stolovitzky, P. Meyer, J. Hoeng
Bioinformatics 31(4), 471--483, 2015

A crowd-sourcing approach for the construction of species-specific cell signaling networks
E. Bilal, T. Sakellaropoulos, I. N. Melas, D. E. Messinis, V. Belcastro, K. Rhrissorrakrai, P. Meyer, R. Norel, A. Iskandar, E. Blaese, J. J. Rice, M. C. Peitsch, J. Hoeng, G. Stolovitzky, L. G. Alexopoulos, C. Poussin
Bioinformatics 31(4), 484--491, 2015

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge
M. Biehl, P. Sadowski, G. Bhanot, E. Bilal, A. Dayarian, P. Meyer, R. Norel, K. Rhrissorrakrai, M. D. Zeller, S. Hormoz
Bioinformatics 31(4), 453--461, 2015

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge
A. Dayarian, R. Romero, Z. Wang, M. Biehl, E. Bilal, S. Hormoz, P. Meyer, R. Norel, K. Rhrissorrakrai, G. Bhanot, F. Luo, A. L. Tarca
Bioinformatics 31(4), 462--470, 2015

Inter-species pathway perturbation prediction via data-driven detection of functional homology
C. Hafemeister, R. Romero, E. Bilal, P. Meyer, R. Norel, K. Rhrissorrakrai, R. Bonneau, A. L. Tarca
Bioinformatics 31(4), 501--508, 2015

Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression
R. Kuffner, N. Zach, R. Norel, J. Hawe, D. Schoenfeld, L. Wang, G. Li, L. Fang, L. Mackey, O. Hardiman, M. Cudkowicz, A. Sherman, G. Ertaylan, M. Grosse-Wentrup, T. Hothorn, J. van Ligtenberg, J. H. Macke, T. Meyer, B. Scholkopf, L. Tran, R. Vaughan, G. S
Nat. Biotechnol. 33(1), 51--57, 2015

Next-Generation Wellness and Prevention Care: From Supporting Technology for Personalization to Ecosystem Formation.
P. Hsueh, H. Chang, S. Ramakrishnan
Healthcare information Management, 4th Edition, Springer Publishing, 2015

Genetic determinants of immunogenicity to factor IX during the treatment of haemophilia B
S. Saini, N. Hamasaki-Katagiri, G. S. Pandey, C. Yanover, C. Guelcher, V. L. Simhadri, S. Dandekar, M. F. Guerrera, C. Kimchi-Sarfaty, Z. E. Sauna
Haemophilia 21(2), 210--218, 2015

Automatic learning-based beam angle selection for thoracic IMRT
Guy Amit, Thomas G Purdie, Alex Levinshtein, Andrew J Hope, Patricia Lindsay, Andrea Marshall, David A Jaffray, Vladimir Pekar
Medical Physics 42(4), 1992-2005, AIP, 2015

Personalized Medicine on Cancer Treatment: Using Big Data Techniques to Integrate Clinical and Genomic Data
Filippo Utro, Ping Zhang, Fei Wang, Jianying Hu
AMIA Summit on Translational Bioinformatics (TBI), Abstract, 2015

Prediction of Drug-Drug Interactions Based on Clinical Side Effects
Ping Zhang, Fei Wang, Jianying Hu
AMIA Summit on Translational Bioinformatics (TBI), Abstract, 2015

Maintenance of Nucleosomal Balance in cis by Conserved AAA-ATPase Yta7
Laura M Lombardi, Matthew D Davis, Jasper Rine
Genetics 199(1), 105--116, Genetics Society of America, 2015

Automated volumetry and regional thickness analysis of hippocampal subfields and medial temporal cortical structures in mild cognitive impairment
Paul A Yushkevich, John B Pluta, Hongzhi Wang, Long Xie, Song-Lin Ding, Eske C Gertje, Lauren Mancuso, Daria Kliot, Sandhitsu R Das, David A Wolk
Human brain mapping 36(1), 258--287, Wiley Online Library, 2015

Segmentation of the Aortic Valve Apparatus in 3D Echocardiographic Images: Deformable Modeling of a Branching Medial Structure
Alison M Pouch, Sijie Tian, Manabu Takabe, Hongzhi Wang, Jiefu Yuan, Albert T Cheung, Benjamin M Jackson, Joseph H Gorman III, Robert C Gorman, Paul A Yushkevich
Statistical Atlases and Computational Models of the Heart-Imaging and Modelling Challenges, pp. 196--203, Springer, 2015

SimBA: Simulation Algorithm to Fit Extant-Population Distributions
Laxmi Parida, Niina Haiminen
BMC Bioinformatics 16(82), 2015
Abstract


2014

Sweet Home: understanding diabetes management via a chinese online community
Zhou, Xiaomu and Sun, Si and Yang, Jiang
Proceedings of the SIGCHI Conference on Human Factors in Computing Systems, pp. 3997--4006, 2014
Abstract

Personal visualization of health conditions
Hsiao, Mark and Hsueh, Pei-Yun Sabrina and Ci-Wei, LAN and Ramakrishnan, Sreeram
US Patent App. 14/178,922
Abstract

Cell density in prostate histopathology images as a measure of tumor distribution
Hayley M Reynolds, Scott Williams, Alan M Zhang, Cheng Soon Ong, David Rawlinson, Rajib Chakravorty, Catherine Mitchell, Annette Haworth
Medical Imaging 2014: Digital Pathology, pp. 90410S

In silico predicted mycobacterial epitope elicits in vitro T-cell responses
Md Kawsar Khan, Shabnam Zaman, Sajib Chakraborty, Rajib Chakravorty, Mohammad Murshid Alam, Taufiqur Rahman Bhuiyan, Muhammad Jubayer Rahman, Carmen Fern\'andez, Firdausi Qadri, Zeba I Seraj
Molecular immunology 61(1), 16--22, Pergamon, 2014

Characterization of the protective HIV-1 CTL epitopes and the corresponding HLA class I alleles: A step towards designing CTL based HIV-1 vaccine
Sajib Chakraborty, Taibur Rahman, Rajib Chakravorty
Advances in virology2014, Hindawi

EP-1693: Biological imaging for focal brachytherapy for prostate cancer
A Haworth, H Reynolds, A Zhang, D Rawlinson, R Chakravorty, C Ong, N Hardcastle, G Liney, M Ebert, S Williams
Radiotherapy and Oncology111, S244--S245, Elsevier, 2014

Measuring cell density in prostate cancer imaging as an input for radiotherapy treatment planning
H Reynolds, S Williams, A Zhang, C Ong, D Rawlinson, R Chakravorty, C Mitchell, A Haworth
Journal of Medical Imaging and Radiology Oncology58, 302, 2014

The introduction of navigation in liver surgery in Brazil
Mauro Monteiro Correia, Jos\'e Paulo de Jesus, Raul Feitosa, D\'ario Augusto Oliveira
Revista do Col\'egio Brasileiro de Cirurgi\~oes 41(6), 451--454, Col\'egio Brasileiro de Cirurgi\~oes, 2014

Proteomic profiles in acute respiratory distress syndrome differentiates survivors from non-survivors
Bhargava, Maneesh and Becker, Trisha L and Viken, Kevin J and Jagtap, Pratik D and Dey, Sanjoy and Steinbach, Michael S and Wu, Baolin and Kumar, Vipin and Bitterman, Peter B and Ingbar, David H and others
PloS one 9(10), e109713, Public Library of Science, 2014
Abstract

How essential are unstructured clinical narratives and information fusion to clinical trial recruitment?
Preethi Raghavan, James L Chen, Eric Fosler-Lussier, Albert M Lai
AMIA, American Medical Informatics Association, 2014

Pervasive Change Challenges Elders
Maria R Ebling
Pervasive Computing, IEEE 13(2), 2--4, IEEE, 2014

A Method for Predicting Drug-Drug Interactions Based on Clinical Side-Effects
Ping Zhang, Fei Wang, Jianying Hu, Robert Sorrentino

Abstract


A blood-based predictor for neocortical Aβ burden in Alzheimer's disease: results from the AIBL study.
SC Burnham, NG Faux, W Wilson, SM Laws, D Ames, J Bedo, AI Bush, JD Doecke, KA Ellis, R Head, G Jones, H Kiiveri, RN Martins, A Rembach, CC Rowe, O Salvado, SL Macaulay, CL Masters, VL Villemagne, Alzheimer’s Disease Neuroimaging Initiative, Biomarkers
Mol Psychiatry19, 519--526, 2014
Abstract

Prevalence of heart failure signs and symptoms in a large primary care population identified through the use of text and data mining of the electronic health record.
Vijayakrishnan R, Steinhubl SR, Ng K, Sun J, Byrd RJ, Daar Z, Williams BA, deFilippi C, Ebadollahi S, Stewart WF.
J Card Fail. 2014 Jul;20(7):459-64.

PARAMO: a PARAllel predictive MOdeling platform for healthcare analytic research using electronic health records.
Ng K, Ghoting A, Steinhubl SR, Stewart WF, Malin B, Sun J.
J Biomed Inform. 2014 Apr;48:160-70.

DDI-CPI, a server that predicts Drug-Drug Interactions through implementing the Chemical-Protein Interactome
Heng Luo*, Ping Zhang*, Hui Huang, Jialiang Huang, Emily Kao, Leming Shi, Lin He, Lun Yang (*Co-First Author)
Nucleic Acids Research (NAR), 2014
Abstract

Robustness properties of a sequential test for vaccine safety in the presence of misspecification
Franks, Riley and Sandhu, Sukhminder and Avagyan, Armen and Lu, Yun and Hong, Han and Garcia, Bruno and Worrall, Christopher and Kelman, Jeffrey and Ball, Robert and MaCurdy, Thomas
Statistical Analysis and Data Mining: The ASA Data Science Journal 7(5), 368--375, Wiley Online Library, 2014
Abstract

Embracing case management for computerization of care pathways
Jing Mei, Jing Li, Yiqin Yu, Xiang Li, Haifeng Liu, Guotong Xie
Medical Informatics Europe Conference (MIE), 2014

Care pathway workbench: evidence harmonization from guideline and data
Yiqin Yu, Haifeng Liu, Jing Li, Xiang Li, Jing Mei, Adam Perer, Fei Wang, Jianying Hu
Medical Informatics Europe Conference (MIE), 2014

Automatic variance analysis of multistage care pathways
Xiang Li, Haifeng Liu, Shilei Zhang, Guotong Xie, Yiqin Yu, Jing Li, Geetika Lakshmanan
Medical Informatics Europe Conference (MIE), 2014

Towards pathway variation identification: aligning patient records with a care pathway
Haifeng Liu, Yang Liu, Xiang Li, Guotong Xie, Geetika Lakshmanan
ACM International Conference on Information and Knowledge Management (CIKM), 2014

Methods of directed self-assembly and layered structures formed therefrom, US Patent 8,623,458, UK Patent 2,485,941, and China Patent ZL201080057340.8 issued
J. Cheng, M. E. Colburn, S. Harrer, W. D. Hinsberg, S. J. Holmes, H.-C. Kim, D. P. Sanders

Method and system for outcome based referral using healthcare data of patient and physician populations
Shahram Ebadollahi, Jianying Hu, Martin S Kohn, Jonathan D Laserson, Hani Neuvirth-Telem, Lavi Shpigelman, Robert K Sorrentino
US Patent 8,660,857

Method, program and system for finding correspondence between terms
Tetsuya Nasukawa, Raymond Harry Rudy, Yuta Tsuboi, Yao-Zhong Zhang
US Patent 8,682,641

DNA sequencing using multiple metal layer structure with organic coatings forming transient bonding to DNA bases, US Patent 8,764,968 issued
A. Afzali-Ardakani, S. Harrer, B. Luan, G. J. Martyna, H. Peng. S. M. Rossnagel, G. Stolovitzky, P. S. Waggoner, G. F. Walker

On Constrained Spectral Clustering and Its Applications
Xiang Wang, Buyue Qian, Ian Davidson
Data Mining and Knowledge Discovery 28(1), 1-30, 2014

Charged Entities as locomotive to control motion of polymers through a nanochannel, US Patent 8,641,879 and UK Patent 2,507,706 issued
S. Harrer, B. Luan, G. J. Martyna, H. Peng, S. Polonsky, S. M. Rossnagel, A. K. Royyuru, G. A. Stolovitzky, G. F. Walker

Semiconductor devices having nanochannels confined by nanometer-spaced electrodes, [also see US 8,558,326], US Patent 8,691,608 issued
S. Harrer, S. Polonsky, M. B. Ketchen, J. A. Ott

Nonnegative Tensor Decomposition
N Hao, L Horesh, ME Kilmer
Compressed Sensing & Sparse Filtering, pp. 123--148, Springer Berlin Heidelberg, 2014

Nuclear Norm Optimization and Its Application to Observation Model Specification
Ning Hao, Lior Horesh, Misha Kilmer
Compressed Sensing & Sparse Filtering, pp. 95--122, Springer Berlin Heidelberg, 2014

Video De-Fencing
Yadong Mu, Wei Liu, and Shuicheng Yan
IEEE Transactions on Circuits and Systems for Video Technology 24(7), 1111-1121, IEEE, 2014
PIC top-quality journal (Multimedia)

Creation of a transient vapor nanogap between two fluidic reservoirs for single molecule manipulation
S. Polonsky, V.S.K. Balagurusamy, J. Ott
Review Of Scientific Instruments, 2014

Self-Taught Spectral Clustering via Constraint Augmentation
Xiang Wang, Jun Wang, Buyue Qian, Fei Wang, Ian Davidson
Proceedings of the 14th SIAM International Conference on Data Mining (SDM), pp. 416-424, 2014

Crossed slit structure for nanopores (method patent), US Patent Application 20140001149A1
S. Harrer, J. Bai, S. Polonsky, S. M. Rossnagel

Scalable High Resolution Trac Heatmaps: Coherent Queue Visualization for Datacenters
Andreea Anghel, Robert Birke, Mitch Gusat
TMA 2014 : 6th International Workshop on Traffic Monitoring and Analysis, IEExplorer

Crossed slit structure for nanopores (device patent), US Patent Application 20140004300A1
S. Harrer, J. Bai, S. Polonsky, S. M. Rossnagel

Scalable High Resolution Trac Heatmaps: Coherent Queue Visualization for Datacenters
Andreea Anghel, Robert Birke, Mitch Gusat
TMA 2014: 6th International Workshop on Traffic Monitoring and Analysis, IEEExplorer

Regulating the transport of DNA through biofriendly nanochannels in a thin solid membrane
Deqiang Wang, Stefan Harrer, Binquan Luan, Gustavo Stolovitzky, Hongbo Peng, Ali Afzali-Ardakani
Scientific reports4, Nature Publishing Group, 2014

Towards Personalized Medicine: Leveraging Patient Similarity and Drug Similarity Analytics
Ping Zhang, Fei Wang, Jianying Hu, Robert Sorrentino
AMIA Summit on Translational Bioinformatics (TBI), 2014
Abstract

Geometric dependence of the conductance drop in a nanopore due to a particle
Sung Cheol Kim, Sridhar Kumar Kannam, Stefan Harrer, Matthew T Downton, Stephen Moore, John M Wagner
Physical Review E 89(4), 042702, American Physical Society, 2014

Charged Entities as locomotive to control motion of polymers through a nanochannel,[also see US 8,641,879], US Patent 8,691,067 issued
S. Harrer, B. Luan, G. J. Martyna, H. Peng, S. Polonsky, S. M. Rossnagel, A. K. Royyuru, G. A. Stolovitzky, G. F. Walker

Exploring the Associations Between Drug Side-effects and Therapeutic Indications
Fei Wang*, Ping Zhang*, Nan Cao, Jianying Hu, Robert Sorrentino (*Co-First Author)
Journal of Biomedical Informatics (JBI), 2014
Abstract

Nano-Pipet Fabrication, US Patent Application US 20140105794A1, [cont. 20140103582A1]
S. Harrer, J. A. Ott, S. Polonsky

Nano-Pipet Fabrication, US Patent Application US 20140103582A1
S. Harrer, J. A. Ott, S. Polonsky

MAINTAINING DATA PRIVACY IN A SHARED DATA STORAGE SYSTEM
S Cohen, A Hartman, J Marberg, M Moffie, K Nagin
US Patent App. 14/184,718

Self-Taught Spectral Clustering via Constraint Augmentation
X. Wang and J. Wang and B. Qian and F. Wang and I. Davidson
Proceedings of the 14th SIAM International Conference on Data Mining (SDM), pp. 416-424, 2014

A Single-Pass Algorithm for Efficiently Recovering Sparse Cluster Centers for High-dimensional Data
J. Yi and L. Zhang and J. Wang and R. Jin and A. Jain
The 31st International Conference on Machine Learning (ICML 2014)

Doubly Regularized Portfolio with Risk Minimization
W. Shen, J. Wang, S. Ma
The Twenty-Eighth AAAI Conference (AAAI-14), 2014

Privacy and Regression Model Preserved Learning
J. Yi and J. Wang and R. Jin
The Twenty-Eighth AAAI Conference (AAAI-14), 2014

Clinical Risk Prediction with Multilinear Sparse Logistic Regression
Fei Wang, Ping Zhang, Buyue Qian, Xiang Wang, Ian Davidson
ACM SIGKDD Conference on Knowledge Discovery and Data Mining (KDD), 2014
Abstract

Unsupervised Learning of Disease Progression Models
Xiang Wang, David Sontag, Fei Wang
Proceedings of the 20th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD), 2014

Clinical Risk Prediction with Multilinear Sparse Logistic Regression
Fei Wang, Ping Zhang, Buyue Qian, Xiang Wang, Ian Davidson
Proceedings of the 20th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD), 2014

A Reconstruction Error Based Framework for Multi-Label and Multi-View Learning
Buyue Qian, Xiang Wang, Jieping Ye, Ian Davidson
IEEE Transactions on Knowledge and Data Engineering, 2014

Using the Cross-Entropy Method to Re-Rank Search Results
H. Roitman, S. Hummel, O. Kurland
ACM Special Interest Group on Information Retrieval (SIGIR), [Search], 2014

A Benchmark Dataset for Automatic Detection of Claims and Evidence in the Context of Controversial Topics
Ehud Aharoni, Anatoly Polnarov, Tamar Lavee, Daniel Hershcovich, Ran Levy, Ruty Rinott, Dan Gutfreund, Noam Slonim
ACL 2014, 64

Clinical Risk Prediction by Exploring High-Order Feature Correlations
Fei Wang, Ping Zhang, Xiang Wang, Jianying Hu
American Medical Informatics Association Annual Symposium (AMIA), 2014
Abstract

Bringing Patients into the Loop: Using Technology to Engage Patients and Improve Health Outcomes
C. Danis, S. Ballen. M J Minitti, R. Farrell, M Ball, R Kennedy, et al.
Journal Of Health Information Management Volume 28(1), 20-27, 2014

Patient Engagement at the Point Of Care: Technology as an Enabler
Catalina Danis, Martha Jean (Marty) Minniti, Sasha Ballen, Marion Ball, Scott Cashon, Margaret Piscitelli, Marjorie Miller, Robert Farrel
Information Technologies for Patient Empowerment in Healthcare, De Gryter, Inc., 2014
Abstract   Forthcoming.

Lunch Line: Using Public Displays and Mobile Devices to Encourage Healthy Eating in an Organization
Kerry Shih-Ping Chang, Catalina M Danis, Robert G. Farrell
Ubicomp '14, ACM, 2014
Abstract   Forthcoming.

Modifying proteins (GPCR), ligands, and nanopore surfaces to allow the detection of binding-induced molecular changes of protein-ligand complexes with nanochannel translocation, US Patent Application US20140179540A1
S. Harrer, M. Downton, N. Gunn, P. Rogers, J. Wagner, R. Bathgate, D. Scott, S. Skafidas

Modifying single proteins (GPCR), ligands, and nanopore surfaces to create binding-induced molecular changes of protein-ligand complexes detected in nanochannel translocation, US Patent 8,835,362 issued
S. Harrer, M. Downton, N. Gunn, P. Rogers, J. Wagner, R. Bathgate, D. Scott, S. Skafidas

Best-Fit in Linear Time for Non-generative Population Simulation
Niina Haiminen, Claude Lebreton, Laxmi Parida
Algorithms in Bioinformatics, in Lecture Notes in Computer Science 8701, 247-262, Springer, 2014
Abstract

BAC Sequencing Using Pooled Methods
CA Saski, FA Feltus, L Parida, N Haiminen
Bacterial Artificial Chromosomes, in Methods in Molecular Biology 1227(3), Springer, 2014
Abstract

Redundancy-weighting for better inference of protein structural features
Chen Yanover, Natalia Vanetik, Michael Levitt, Rachel Kolodny, Chen Keasar
Bioinformatics, btu242, Oxford Univ Press, 2014

SOCIAL PROXIMITY NETWORKS FOR MOBILE PHONES
Vijay Ekambaram, Vikrant Nandakumar, Vikas Joshi and Ramasuri Narayanam

Automatically Fixing Inaccessible widgets during Mobile Application Execution
Vijay Ekambaram, Ashish Mathur, Vikrant Nandakumar and Vivek Sharma

Large-Scale Data Analytics
Aris Gkoulalas-Divanis, Abderrahim Labbi
Divanis, A Labbi - 2014 - Springer, Springer

Publishing data from electronic health records while preserving privacy: A survey of algorithms
Aris Gkoulalas-Divanis, Grigorios Loukides, Jimeng Sun
Journal of biomedical informatics, Elsevier, 2014

Privacy protection in open information management platforms
Aris Gkoulalas-Divanis, Pol Mac Aonghusa
IBM Journal of Research and Development 58(1), 2014

Cybersecurity for a Smarter Planet
MS Viveros, CC Palmer, AR Szakal, KJ Pearsall, A Gkoulalas-Divanis, P Mac Aonghusa, M Azua Himmel, F Grossman, DA Ortiz-Yepes, RJ Hermann, others
IBM Journal of Research and Development, 2014

Toward smarter healthcare: Anonymizing medical data to support research studies
A Gkoulalas-Divanis, G Loukides, J Sun
IBM Journal of Research and Development 58(1), 9--1, IBM, 2014

SECRETA: A System for Evaluating and Comparing RElational and Transaction Anonymization algorithms.
Giorgos Poulis, Aris Gkoulalas-Divanis, Grigorios Loukides, Spiros Skiadopoulos, Christos Tryfonopoulos
EDBT, pp. 620--623, 2014

Disassociation for Electronic Health Record Privacy
Grigorios Loukides, John Liagouris, Aris Gkoulalas-Divanis, Manolis Terrovitis
Journal of biomedical informatics, Elsevier, 2014

Comparative exomics of Phalaris cultivars under salt stress
N. Haiminen, M. Klaas, Z. Zhou, F. Utro, P. Cormican, T. Didion, C. Sig Jensen, C.E. Mason, S. Barth, L. Parida
BMC Genomics 15(Suppl 6), S18, BioMed Central Ltd, 2014
Abstract

SPUD—Semantic Processing of Urban Data
Spyros Kotoulas, Vanessa Lopez, Raymond Lloyd, Marco Luca Sbodio, Freddy Lecue, Martin Stephenson, Elizabeth Daly, Veli Bicer, Aris Gkoulalas-Divanis, Giusy Di Lorenzo, Anika Schumann, Pol Mac Aonghusa
Web Semantics: Science, Services and Agents on the World Wide Web 24(0), 11 - 17, 2014
The Semantic Web Challenge 2012

SVM based Speaker Recognition: Harnessing Trials with Multiple Enrollment Sessions
J. Pelecanos, W. Zhu and S. Yaman
Interspeech, 2014

Better Bounds for Event Sequencing Testing
Oded Margalit
The 2nd International Workshop on Combinatorial Testing (IWCT 2013), pp. 281-284, IEEE, 2014
Abstract

When Location Meets Social Multimedia: A Survey on Vision-based Recognition and Mining for Geo-Social Multimedia Analytics
Rongrong Ji, Yue Gao, Wei Liu, Xing Xie, Qi Tian, and Xuelong Li
ACM Transactions on Intelligent Systems and Technology 5(2), ACM, 2014
Multimedia, AI

Localizing Web Videos Using Social Images
Liujuan Cao, Xian-Ming Liu, Wei Liu, Rongrong Ji, and Thomas Huang
Information Sciences, Elsevier, 2014
Multimedia, Knowledge Discovery & Data Mining

Weakly Supervised Visual Dictionary Learning by Harnessing Image Attributes
Yue Gao, Rongrong Ji, Wei Liu, Qionghai Dai, and Gang Hua
IEEE Transactions on Image Processing, IEEE, 2014
PIC top-quality journal (Multimedia)

Towards Large-Scale Histopathological Image Analysis: Hashing-Based Image Retrieval
Xiaofan Zhang, Wei Liu, Murat Dundar, Badve Sunil, and Shaoting Zhang
IEEE Transactions on Medical Imaging, IEEE, 2014
PIC top-quality journal (Multimedia, Medical Informatics)

Scalable Mammogram Retrieval Using Anchor Graph Hashing
Jingjing Liu, Shaoting Zhang, Wei Liu, Xiaofan Zhang, and Dimitris N. Metaxas
IEEE International Symposium on Biomedical Imaging (ISBI), IEEE, 2014
Multimedia, Medical Informatics

Mining Histopathological Images via Hashing-Based Scalable Image Retrieval
Xiaofan Zhang, Wei Liu, and Shaoting Zhang
IEEE International Symposium on Biomedical Imaging (ISBI), IEEE, 2014
Best Paper Travel Award, Multimedia, Medical Informatics

Mining Histopathological Images via Composite Hashing and Online Learning
Xiaofan Zhang, Lin Yang, Wei Liu, Hai Su, and Shaoting Zhang
Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2014
Student Travel Award, PIC top-quality conference (Multimedia, Medical Informatics)

Scalable Histopathological Image Analysis via Active Learning
Yan Zhu, Shaoting Zhang, Wei Liu, and Dimitris N. Metaxas
Annual International Conference on Medical Image Computing and Computer Assisted Intervention (MICCAI), 2014
Student Travel Award, PIC top-quality conference (Multimedia, Medical Informatics)

Fast Tweet Retrieval with Compact Binary Codes
Weiwei Guo, Wei Liu, and Mona Diab
International Conference on Computational Linguistics (Coling), 2014
PIC top-quality conference (Natural Language Processing)

Two-Stage Hashing for Fast Document Retrieval
Hao Li, Wei Liu, and Heng Ji
Annual Meeting of the Association for Computational Linguistics (ACL), 2014
PIC top-quality conference (Natural Language Processing)

Can Visual Recognition Benefit from Auxiliary Information in Training?
Qilin Zhang, Gang Hua, Wei Liu, Zicheng Liu, and Zhengyou Zhang
Asian Conference on Computer Vision (ACCV), 2014
Multimedia, User Interface Technologies

Sub-Selective Quantization for Large-Scale Image Search
Yeqing Li, Chen Chen, Wei Liu, and Junzhou Huang
AAAI Conference on Artificial Intelligence (AAAI), AAAI, 2014
PIC top-quality conference (Multimedia, AI)

Graduated Consistency-Regularized Optimization for Multi-Graph Matching
Junchi Yan, Yin Li, Wei Liu, Hongyuan Zha, Xiaokang Yang, and Stephen Mingyu Chu
European Conference on Computer Vision (ECCV), Springer, 2014
PIC top-quality conference (Multimedia, User Interface Technologies)

Image Fusion with Local Spectral Consistency and Dynamic Gradient Sparsity
Chen Chen, Yeqing Li, Wei Liu, and Junzhou Huang
IEEE Conference on Computer Vision and Pattern Recognition (CVPR), IEEE, 2014
PIC top-quality conference (Multimedia, User Interface Technologies)

Unsupervised One-Class Learning for Automatic Outlier Removal
Wei Liu, Gang Hua, and John R. Smith
IEEE Conference on Computer Vision and Pattern Recognition (CVPR), IEEE, 2014
PIC top-quality conference (Multimedia, User Interface Technologies)

Zeta Hull Pursuits: Learning Non-convex Data Hulls
Yuanjun Xiong, Wei Liu, Deli Zhao, and Xiaoou Tang
Advances in Neural Information Processing Systems (NIPS), MIT Press, 2014
PIC top-quality conference (Multimedia, AI)

Discrete Graph Hashing
Wei Liu, Cun Mu, Sanjiv Kumar, and Shih-Fu Chang
Advances in Neural Information Processing Systems (NIPS), MIT Press, 2014
PIC top-quality conference (Multimedia, AI)

A Benchmark Dataset for Automatic Detection of Claims and Evidence in the Context of Controversial Topics
Ehud Aharoni*, Anatoly Polnarov*, Tamar Lavee, Daniel Hershcovich, Ran Levy, Ruty Rinott, Dan Gutfreund, and Noam Slonim
1st Workshop on Argumentation Mining, ACL, 2014

A Unified Framework for Outlier Detection in Trace Data Analysis
Zhiguo Li, Baseman, R.J. ; Zhu, Y. ; Tipu, F.A. ; Slonim, N. ; Shpigelman, L.
IEEE Transactions on Semiconductor Manufacturing. 27(1), 95 - 103, IEEE, 2014

Context Dependent Claim Detection
Ran Levy, Yonatan Bilu, Daniel Hershcovich, Ehud Aharoni and Noam Slonim
COLING, 2014

US 8,626,743: Techniques for personalized and adaptive search services
Doganata; Yurdaer Nezihi, Dressi; Youssef, Kozakov; Lev

US 8,626,735: Techniques for personalized and adaptive search services
Doganata; Yurdaer Nezihi, Dressi; Youssef, Kozakov; Lev

US 8,756,171: Generating predictions from a probabilistic process model
Lakshmanan; Geetika Tewari, Doganata; Yurdaer Nezihi, Shamsi; Davood


US 8,786,597: Management of a history of a meeting
Doganata; Yurdaer Nezihi, Topkara; Mercan

Ibm research australia at lifeclef2014: Plant identification task
Qiang Chen, Mani Abedini, Rahil Garnavi, Xi Liang
Working notes of CLEF 2014 conference

Finding Mr and Mrs Entity in the City of Knowledge
Vanessa Lopez, Martin Stephenson, Spyros Kotoulas, Pierpaolo Tommasi
Hypertext 2014, pp. 261--266
Abstract

Smart traffic analytics in the semantic web with STAR-CITY: Scenarios, system and lessons learned in Dublin City
Freddy L\'ecu\'e, Simone Tallevi-Diotallevi, Jer Hayes, Robert Tucker, Veli Bicer, Marco Sbodio, Pierpaolo Tommasi
Web Semantics: Science, Services and Agents on the World Wide Web27, 26--33, Elsevier, 2014

Predicting Severity of Road Traffic Congestion Using Semantic Web Technologies
Freddy Lecue, Robert Tucker, Veli Bicer, Pierpaolo Tommasi, Simone Tallevi-Diotallevi, Marco Luca Sbodio
ESWC, pp. 611--627, Springer, 2014

STAR-CITY: semantic traffic analytics and reasoning for CITY
Freddy Lecue, Simone Tallevi-Diotallevi, Jer Hayes, Robert Tucker, Veli Bicer, Marco Luca Sbodio, Pierpaolo Tommasi
IUI'14 19th International Conference on Intelligent User Interfaces, IUI'14, Haifa, Israel, February 24-27, 2014, pp. 179--188

Survey on Semantic Trajectories Modeling
Christine Parent, Stefano Spaccapietra, Chiara Renso, Gennady Andrienko, Natalya Andrienko, Vania Bogorny, Maria Luisa Damiani, Aris Gkoulalas-Divanis, Jose Macedo, Nikos Pelekis, others
ACM Computing Surveys, 2014

GUARANTEEING ANONYMITY OF LINKED DATA GRAPHS
Aris Gkoulalas-divanis, Spyros Kotoulas, Vanessa Lopez, Marco Luca Sbodio
US Patent 20,140,325,666

Apriori-based algorithms for k m-anonymizing trajectory data
Giorgos Poulis, Spiros Skiadopoulos, Grigorios Loukides, Aris Gkoulalas-Divanis
Transactions on Data Privacy (TDP), 2014

A Method for Generating Drug Repositioning Hypothesis by Integrating Multiple Aspects of Drug Similarity and Disease Similarity
Ping Zhang, Fei Wang, Jianying Hu

Abstract

A Method of Graph-based Computation for Bio-Signals
P. Hsueh, L. Lai, Y., Xia, C. Chen


Guest editorial: Special section on optical interconnects
Rasit O. Topaloglu
TCAD, 2014

Structured Proportional Jump Processes
Tal El-Hay, Omer Weissbrod, Elad Eban, Maurizio Zazzi, Francesca Incardona
Proceedings of the Thirtieth Conference on Uncertainty in Artificial Intelligence (UAI), 2014

High-performance computing for the theoretical study of nanoscale and molecular interconnects
Rasit O. Topaloglu, Swati Manjari, Saroj Nayak
Nanotechnology: Concepts, Methodologies, Tools, and Applications, IGI Global, 2014

Technology implications on approximate computing
Rasit O. Topaloglu
Variability Modeling and Characterization Workshop, 2014

Feedback control of dimensions in nanopore and nanofluidic devices, UK Patent 2,499,161 issued
S. Harrer, S. M. Rossnagel, P. S. Waggoner

WGS analysis and interpretation in clinical and public health microbiology laboratories: What are the requirements and how do existing tools compare?
Wyres, K.L., Conway, T.C., Garg, S., Queiroz, C., Reumann, M., Holt, K. and Rusu, L.I.
Pathogens 3(2), 437-458, 2014

A platform for leveraging next generation sequencing for routine microbiology and public health use.
Rusu, L. I., Wyres, K. L., Reumann, M., Queiroz, C., Bojovschi, A., Conway, T., Garg, S., Edwards, D. J., Hogg, G. and Holt, K. E.
BMC Health Information Science and Systems, 2014
in press

Infrastructure asset management
Andrew J Davenport, Wei Shan Dong, Frank D Fenhagen IV, Arun Hampapur, Zhong Bo Jiang, Jayant R Kalagnanam, Hongfei Li, Shilpa N Mahatma, Wei Sun, Lexing Xie, others
US Patent App. 14/259,528

STOCHASTIC INVESTMENT PLANNING SYSTEM
Mehmet F Candas, Arun Hampapur, Tarun Kumar, Shilpa N Mahatma
US Patent 20,140,330,746

ASSET LIFECYCLE MANAGEMENT
Mehmet F Candas, Arun Hampapur, Tarun Kumar, Shilpa N Mahatma
US Patent 20,140,330,749

Simulation based analytics for efficient planning and management in multimodal freight transportation industry
Parijat Dube, Jo\~ao PM Gon\c{c}alves, Shilpa Mahatma, Francisco Barahona, Milind Naphade, Mark Bedeman
Proceedings of the 2014 Winter Simulation Conference, pp. 1943--1954

Performance Driven Municipal Asset Needs and Sustainability Analysis
Mehmet F Candas, Arun Hampapur, Tarun Kumar, Shilpa N Mahatma, Chandrasekhara K Reddy
US Patent 20,140,330,609

Optimization of a manufacturing process of an integrated circuit layout
David L DeMaris, Maria Gabrani, Ekaterina Volkova
US Patent 8,661,370

Automated sample plan selection for OPC modeling
Nathalie Casati, Maria Gabrani, Ramya Viswanathan, Zikri Bayraktar, Om Jaiswal, David DeMaris, Amr Y Abdo, James Oberschmidt, Andreas Krause
in Optical Microlithography XXVII, Kafai Lai (Ed.), Proceedings of SPIE, pp. 90520J, 2014

Implementing the L Segment Voronoi Diagram in CGAL and Applying in VLSI Pattern Analysis
Panagiotis Cheilaris, Sandeep Kumar Dey, Maria Gabrani, Evanthia Papadopoulou
Proceedings of International Congress on Mathematical Software (ICMS 2014). Lecture Notes in Computer Science, pp. 198-205, Springer

Fast detection of novel problematic patterns based on dictionary learning and prediction of their lithographic difficulty
Frank de Morsier, D DeMaris, M Gabrani, N Casati
in Optical Microlithography XXVII, Kafai Lai (Ed.), Proceedings of SPIE, pp. 905211, 2014

Estimating pattern sensitivity to the printing process for varying dose/focus conditions for RET development in the sub-22nm era
Benoit Seguin, Henri Saab, Maria Gabrani, Virginia Estellers
Metrology, Inspection, and Process Control for Microlithography XXVIII, Jason P. Cain (Ed.), Proceedings of SPIE, pp. 90500P, 2014

Surface Reconstruction from Microscopic Images in Optical Lithography
Virginia Estellers, Jean-Philippe Thiran, Maria Gabrani
IEEE Transactions on Image Processing 23(8), 3560-3573, 2014

SIMULTANEOUS FINISH OF STORES AND DEPENDENT LOADS
Takeshi Ogasawara
US Patent 20,140,325,188

Workload Characterization of Server-Side JavaScript
Takeshi Ogasawara
2014 IEEE International Symposium on Workload Characterization (IISWC)

Group-in-a-Box Meta-Layouts for Topological Clusters and Attribute-Based Groups: Space-Efficient Visualizations of Network Communities and Their Ties
S Chaturvedi, C Dunne, Z Ashktorab, R Zachariah, B Shneiderman
Computer Graphics Forum, pp. 52--68, 2014


Multi-atlas Segmentation with Learning-Based Label Fusion

Mahmood - Machine Learning in Medical ..., 2014 - Springer

Fully automatic segmentation of the mitral leaflets in 3D transesophageal echocardiographic images using multi-atlas joint label fusion and deformable medial modeling
Alison M Pouch, Hongzhi Wang, Manabu Takabe, Benjamin M Jackson, JH Gorman, Robert C Gorman, Paul A Yushkevich, Chandra M Sehgal
Medical image analysis 18(1), 118--129, Elsevier, 2014

Edge-Weighted Centroid Voronoi Tessellation with Propagation of Consistency Constraint for 3D Grain Segmentation in Microscopic Superalloy Images
Youjie Zhou, Lili Ju, Yu Cao, Jarrell Waggoner, Yuewei Lin, Jeff Simmons, Song Wang
Computer Vision and Pattern Recognition Workshops (CVPRW), 2014 IEEE Conference on, pp. 258--265

Chronological classification of ancient paintings using appearance and shape features
Qin Zou, Yu Cao, Qingquan Li, Chuanhe Huang, Song Wang
Pattern Recognition Letters49, 146--154, Elsevier, 2014

Automatic inpainting by removing fence-like structures in RGBD images
Qin Zou, Yu Cao, Qingquan Li, Qingzhou Mao, Song Wang
Machine Vision and Applications 25(7), 1841--1858, Springer, 2014

Methods and Systems for Discovery of Linkage Points Between Data Sources
Oktie Hassanzadeh, Mauricio Antonio Hernandez-sherrington, Ching-tien Ho, Lucian Popa
US Patent 20,140,337,331

Epidemiology of infective endocarditis in a tertiary-center in Jerusalem: A 3-year prospective survey
M Korem, S Israel, D Gilon, A Cahan, AE Moses, C Block, J Strahilevitz
European journal of internal medicine 25(6), 550--555, Elsevier, 2014

Link2Outcome: Coordinating Social Care and Healthcare using Semantic Web Technologies
Spyros Kotoulas, Vanessa Lopez, Pierpaolo Tommasi, Martin Stephenson, Marco Luca Sbodio, Wei Jia Shen, Gang Hu, Veli Bicer, Anastasios Kementsietsidis, M Mustafa Rafique, others
challenge.semanticweb.org, 2014

Towards Pathway Variation Identification: Aligning Patient Records with a Care Pathway
Yaing Liu, Haifeng Liu, Xiang Li, Guo Tong Xie, Geetika T Lakshmanan
Conference on Information and Knowledge Management (CIKM), 2014

Automatic Variance Analysis of Multistage Care Pathway
Xiang Li, 1, Haifeng Liu, Shilei Zhang, Jing Mei, Guotong Xie, Yiqin Yua, Jing Li, and Geetika T. Lakshmanan
European Federation for Medical Informatics (EFMI), 2014

Multiparametric 3D in vivo ultrasound vibroelastography imaging of prostate cancer: Preliminary results
Mehdi Moradi, S Sara Mahdavi, Guy Nir, Omid Mohareri, Anthony Koupparis, Louis-Olivier Gagnon, Ladan Fazli, Rowan G Casey, Joseph Ischia, Edward C Jones, others
Medical physics 41(7), 073505, American Association of Physicists in Medicine, 2014

Improved parameter extraction and classification for dynamic contrast enhanced MRI of prostate
Nandinee Fariah Haq, Piotr Kozlowski, Edward C Jones, Silvia D Chang, S Larry Goldenberg, Mehdi Moradi
SPIE Medical Imaging, pp. 903511--903511, 2014

Towards enabling ultrasound guidance in cervical cancer high-dose-rate brachytherapy
Adrian Wong, Samira Sojoudia, Marc Gaudet, Wan Wan Yap, Silvia D Chang, Purang Abolmaesumi, Christina Aquino-Parsons, Mehdi Moradi
SPIE Medical Imaging, pp. 90361Q--90361Q, 2014

Generalized HARDI Invariants by Method of Tensor Contraction
Yaniv Gur, Chris R Johnson
International Symposium on Biomedical Imaging (ISBI), 2014

A preliminary study on the effect of motion correction on HARDI reconstruction
Shireen Elhabian, Yaniv Gur, Clement Vachet, Joseph Piven, Martin Styner, Ilana Leppert, G Bruce Pike, Guido Gerig
Biomedical Imaging (ISBI), 2014 IEEE 11th International Symposium on, pp. 1055--1058

Motion is Inevitable: The Impact of Motion Correction Schemes on HARDI Reconstructions
S. Elhabian, Y. Gur, J. Piven, M. Styner, I. Leppert, G. Bruce Pike, G. Gerig
Computational Diffusion MRI (CDMRI), 2014

Assessment of white matter microstructure in stroke patients using NODDI
Ganesh Adluru, Yaniv Gur, Jeffrey Anderson, Lorie Richards, Nagesh Adluru, Edward DiBella
EMBC, 2014

Informatics methods in medical privacy
Aris Gkoulalas-Divanis, Grigorios Loukides, Li Xiong, Jimeng Sun, Ada Wai-Chee Fu, Ke Wang, Raymond Chi-Wing Wong, Jia Wang, Minhao Jiang, Sheng Yu, others
Journal of biomedical informatics50, 1--3, Academic Press, 2014

Multi-parametric 3D Quantitative Ultrasound Vibro-Elastography Imaging for Detecting Palpable Prostate Tumors
Omid Mohareri, Angelica Ruszkowski, Julio Lobo, Joseph Ischia, Ali Baghani, Guy Nir, Hani Eskandari, Edward Jones, Ladan Fazli, Larry Goldenberg, others
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2014, pp. 561--568, Springer

WatsonPaths: Scenario-based Question Answering and Inference over Unstructured Information
A Lally, S Bagchi, M A Barborak, D W Buchanan, J Chu-Carroll, D A Ferrucci, M R Glass, A Kalyanpur, E T Mueller, J W Murdock, S Patwardhan, J M Prager, C A Welty
Technical Report Research Report RC25489, IBM Research, 2014
Abstract

Systematic Prediction of Drug Combinations Based on Clinical Side-Effects
Hui Huang*, Ping Zhang*, Xiaoyan A. Qu, Philippe Sanseau, Lun Yang (*Co-First Author)
Scientific Reports, Nature Publishing Group, 2014
Abstract

Functional gene groups are concentrated within chromosomes, among chromosomes and in the nuclear space of the human genome
Annelyse Thevenin, Liat Ein-Dor, Michal Ozery-Flato, Ron Shamir
Nucleic acids research, gku667, Oxford Univ Press, 2014


Problem-oriented patient record summary: An early report on a Watson application
M. Devarakonda, Dongyang Zhang, Ching-Huei Tsou, M. Bornea
e-Health Networking, Applications and Services (Healthcom), 2014 IEEE 16th International Conference on, pp. 281-286

Improving Cross-domain Information Sharing for Care Coordination using Semantic Web Technologies
Spyros Kotoulas, Vanessa Lopez, Pierpaolo Tommasi, Marco Luca Sbodio, Martin Stephenson and Pol Mac Aonghusa
In Proc. of the Intelligent User Interfaces 2014 (Research track and Demo), 2014, pp. 347--352
Abstract

A linked data approach to care coordination
Spyros Kotoulas, Vanessa L\'{o}pez, Marco Luca Sbodio, Martin Stephenson, Pierpaolo Tommasi, Pol Mac Aonghusa
25th ACM Conference on Hypertext and Social Media, HT '14, Santiago, Chile, September 1-4, 2014, pp. 77--87

The species translation challenge—a systems biology perspective on human and rat bronchial epithelial cells
Carine Poussin, Carole Mathis, Leonidas G Alexopoulos, Dimitris E Messinis, R\'emi HJ Dulize, Vincenzo Belcastro, Ioannis N Melas, Theodore Sakellaropoulos, Kahn Rhrissorrakrai, Erhan Bilal, others
Scientific Data1, Nature Publishing Group, 2014

Inter-species Inference of Gene Set Enrichment in Lung Epithelial Cells from Proteomic and Large Transcriptomic Data Sets
Sahand Hormoz, Gyan Bhanot, Michael Biehl, Erhan Bilal, Pablo Meyer, Raquel Norel, Kahn Rhrissorrakrai, Adel Dayarian
Bioinformatics, btu569, Oxford Univ Press, 2014

Cross-narrative temporal ordering of medical events
Preethi Raghavan, Eric Fosler-Lussier, No\'emie Elhadad, Albert M Lai
Proceedings of the 52nd Annual Meeting of the Association for Computational Linguistics (ACL), pp. 998--1008, 2014

A review of approaches to identifying patient phenotype cohorts using electronic health records
Chaitanya Shivade, Preethi Raghavan, Eric Fosler-Lussier, Peter J Embi, Noemie Elhadad, Stephen B Johnson, Albert M Lai
Journal of the American Medical Informatics Association 21(2), 221--230, 2014


Context-sensitive Personal Speech Completion Aid
R. Farrel, C. Danis, X. Zhu, P. Hsueh
Technical Report, 2014

Detecting Cognitive Change from Communication Patterns
R. Farrel, X. Zhu, C. Danis, P. Hsueh

System and method for signaling mild cognitive impairment of a vehicle operator
R. Farrel, C. Danis, X. Zhu, P. Hsueh
Technical Report, 2014

Dynamic and accretive composition of patient engagement instruments for personalized plan generation
P. Hsueh, S. Ramakrishnan, X. Zhu

Gap Analysis of Insight-Driven Personalized Health Services through Patient-Controlled Devices. MIE 2014 Workshop.
Hsueh, P.S., M. Marschollek, Y. Peres, S. von Cavallar, F. J. Martin Sanchez.
2014 European Medical Informatics Conference (MIE) Proceedings

Progressive testing of health self-efficacy and literacy for personalized engagement
Hsueh, P., X. Zhu, S. Ramakrishnan
Proceedings of the 25th European Medical Informatics Conference (MIE 2014)

Automatic Summarization of Risk Factors Preceding Disease Progression: An Insight-driven Healthcare Service Case Study on Using Medical Records of Diabetic Patients.
Hsueh, P.S., X. Zhu, M. Hsiao, S. Lee, V. Deng, S. Ramakrishnan.
World Wide Web Journal, 2014

Development of Temporal Context-based Feature Abstractions for Enabling Monitoring and Managing of Interventions. .
Hsueh, P.S., K. Yu, M. Akushevich, S. Sharma, S. Ramakrishnan, P. Mooiweer
Proceedings of the 25th European Medical Informatics Conference (MIE 2014)

Dynamic and accretive composition of patient engagement instruments for personalized plan generation
Hsueh, P., X. Zhu, V. Deng, S. Ramakrishnan, M. Ball
Nursing Informatics 2014 (NI 2014)

Quantifying QRS changes during myocardial ischemia: Insights from high frequency electrocardiography
Guy Amit, Yair Granot, Shimon Abboud
Journal of Electrocardiology 47(4), 505-511, Elsevier, 2014

Apparatus and method for detecting myocardial ischemia using analysis of high frequency components of an electrocardiogram
Guy Amit, Oded Luria, Eran Toledo, Yair Granot, Tamir Ben-David
US Patent 8,626,275

Automatic learning-based selection of beam angles in radiation therapy of lung cancer
Guy Amit, Thomas G Purdie, Alex Levinshtein, Andrew J Hope, Patricia Lindsay, David A Jaffray, Vladimir Pekar
11th IEEE International Symposium on Biomedical Imaging (ISBI), pp. 230--233, 2014

A relative patterns discovery for enhancing outlier detection in categorical data
H.T. Pai, F. Wu, P.Y. Hsueh
Decision Support Systems67, 90-99, 2014

Automatic Clustering and Thickness Measurement of Anatomical Variants of the Human Perirhinal Cortex
Long Xie, John Pluta, Hongzhi Wang, Sandhitsu R Das, Lauren Mancuso, Dasha Kliot, Brian B Avants, Song-Lin Ding, David A Wolk, Paul A Yushkevich
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2014, pp. 81--88, Springer

Segmentation of anatomical structures in four-chamber view echocardiogram images

Mahmood - ... Recognition (ICPR), 2014 ..., 2014 - ieeexplore.ieee.org

Anatomical Structure Labeling in Apical Four-Chamber View Echocardiogram Images
Yu Cao, Colin Compas, Hongzhi Wang, Tanveer Syeda-Mahmood
Computing in Cardiology, 2014

Exploring Big Data with Helix: Finding Needles in a Big Haystack
Jason B. Ellis, Achille Fokoue, Oktie Hassanzadeh, Anastasios Kementsietsidis, Kavitha Srinivas, Michael J. Ward
SIGMOD Record 43(4), 43--54, 2014

Exploring the associations between drug side-effects and therapeutic indications
F. Wang, P. Zhang, N. Cao, J. Hu, and R. Sorrentino
Journal of Biomedical Informatics51, 15-23, 2014


2013

Messaging to your doctors: understanding patient-provider communications via a portal system
Sun, Si and Zhou, Xiaomu and Denny, Joshua C and Rosenbloom, Trent S and Xu, Hua
Proceedings of the SIGCHI Conference on Human Factors in Computing Systems, pp. 1739--1748, 2013
Abstract

Personalized compliance feedback via model-driven sensor data assessment
Hsiao, Mark and Hsueh, Pei-Yun Sabrina and Ramakrishnan, Sreeram
US Patent App. 13/969,722
Abstract

Personalized healthcare and adherence: issues and challenges.
Hsueh, Pei-Yun Sabrina and Shen, Bern and Patel, Vimla and Ball, Marion
MedInfo, pp. 1238, 2013
Abstract

Method and appartus for identifying possible treatment non-adherence
Liat Ein-Dor, Jianying Hu, Martin Steven Kohn, Michal Ozery-Flato, Michal Rosen-Zvi
US20150006189 A1

Spatially-Explicit Simulation Modeling of Ecological Response to Climate Change\&58; Methodological Considerations in Predicting Shifting Population Dynamics of Infectious Disease Vectors
Justin V Remais, Yang Liu, Joshua S Fu, Manoj Gambhir, Howard H Chang, Radhika Dhingra, Violeta Jimenez
ISPRS International Journal of Geo-Information 2(3), 645--664, Directory of Open Access Journals, 2013


Protein expression profile of rat type two alveolar epithelial cells during hyperoxic stress and recovery
Bhargava, Maneesh and Dey, Sanjoy and Becker, Trisha and Steinbach, Michael and Wu, Baolin and Lee, Sang Mee and Higgins, LeeAnn and Kumar, Vipin and Bitterman, Peter B and Ingbar, David H and others
American Journal of Physiology-Lung Cellular and Molecular Physiology 305(9), L604--L614, American Physiological Society Bethesda, MD, 2013
Abstract

Mining Diabetes Complication and Treatment Patterns for Clinical Decision Support
Lu Liu, Jie Tang, Yu Cheng, Ankit Agrawal, Wei-keng Liao, Alok Choudhary
In the 22th ACM International Conference on Information and Knowledge Management (CIKM 2013)

Detecting and Tracking Disease Outbreaks in Real-time through Social Media
Yusheng Xie, Zhengzhang Chen, Kunpeng Zhang, Yu Cheng, Ankit Agrawal, Wei-keng Liao, and Alok Choudhary
In the 23rd International Joint Conference on Artificial Intelligence (IJCAI 2013)

Systems and Methods for Boosting Coal Quality Measurement Statement of Related Cases
Ping Zhang, Liang Lan, Amit Chakraborty, Chao Yuan, Holger Hackstein

Abstract

A Framework for Evaluating Sequential Clinical Interventions with Disease Progression
Jing Mei, Haifeng Liu, Weijia Shen, Wen Sun, Gang Hu, Guotong Xie, Yue Pan.
Proceedings of the 14th World Congress on Medical and Health Informatics (MedInfo 2013)

Using data mining techniques on discovering physician practice patterns regarding to medication prescription - an exploratory study
Jianzhou Feng, Weijia Shen, Feng Cao, Yuan Ni, Peng Cai, Wen Sun, Xiang Li
World Congress on Health and Biomedical Informatics (MEDINFO), 2013

An efficacy driven approach for medication recommendation in type 2 diabetes treatment using data mining techniques
Haifeng Liu, Guotong Xie, Jing Mei, Weijia Shen, Wen Sun, Xiang Li
World Congress on Health and Biomedical Informatics (MEDINFO), 2013

SPOCS: a smarter point of care system for coordinated chronic disease management
Feng Cao, Yuan Ni, Weijia Shen, Wen Sun, Xiang Li, Zheng Tao
World Congress on Health and Biomedical Informatics (MEDINFO), 2013

Mining information dependency in outpatient encounters for chronic disease care
Wen Sun, Weijia Shen, Xiang Li, Feng Cao, Yuan Ni, Haifeng Liu, Guotong Xie
World Congress on Health and Biomedical Informatics (MEDINFO), 2013

Chart-confirmed Guillain-Barre syndrome after 2009 H1N1 influenza vaccination among the Medicare population, 2009--2010
Polakowski, Laura L and Sandhu, Sukhminder K and Martin, David B and Ball, Robert and MaCurdy, Thomas E and Franks, Riley L and Gibbs, Jonathan M and Kropp, Garner F and Avagyan, Armen and Kelman, Jeffrey A and others
American journal of epidemiology 178(6), 962--973, Oxford University Press, 2013
Abstract

Building better drugs: developing and regulating engineered therapeutic proteins
Chava Kimchi-Sarfaty, Tal Schiller, Nobuko Hamasaki-Katagiri, Mansoor A Khan, Chen Yanover, Zuben E Sauna
Trends in pharmacological sciences 34(10), 534--548, Elsevier, 2013

Forming an electrode having reduced corrosion and water decomposition on surface using a custom oxide layer, US Patent 8,598,081 issued
A. Afzali-Ardakani, S. Ahmed, H. Deligianni, D. L. Goldfarb, S. Harrer, H. Peng, S. Polonsky, S. Rossnagel, X. Shao, G. A. Stolovitzky

Method of fabricating dual damascene structures using a multilevel multiple exposure patterning scheme, US Patent 8,536,031 issued
J. C. Arnold, K.-J. Chen, M. E. Colburn, D. L. Goldfarb, S. Harrer, S. J. Holmes, P. Varanasi

Functionally switchable self-assembled coating compound for controlling translocation of molecule through nanopores, US Patent Application 20130263946
S. Harrer, A. Afzali-Ardakani, B. Luan, H. Peng, G. A. Stolovitzky, D. Wang

Watson: Beyond Jeopardy!
David A. Ferrucci, Anthony Levas, Sugato Bagchi, David Gondek, Erik T. Mueller
Artif. Intell.199, 93--105, 2013

Improving breast cancer survival analysis through competition-based multidimensional modeling
Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A Logsdon, Gaurav Pandey, Benjamin A Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H Mecham, others
2013

CONTROL APPARATUS
T. Ogasawara
US Patent App. 12/606,242

Method and System for Speeding Up Mutual Exclusion
T. Ogasawara, A. Koseki, H. Komatsu, K. Kawachiya, T. Onodera
US Patent App. 12/173,551

METHOD FOR ALLOWING EXCLUSIVE ACCESS TO SHARED DATA
T. Inagaki, T. Nakaike, T. Ogasawara, T. Suganuma
US Patent App. 12/553,166

Semiconductor devices having nanochannels confined by nanometer-spaced electrodes, US Patent 8,558,326 issued
S. Harrer, S. Polonsky, M. B. Ketchen, J. A. Ott

Efficient and flexible anonymization of transaction data
G. Loukides, A. Gkoulalas-Divanis, J. Shao
Knowledge and Information Systems, 1--58, Springer, 2013

Utility-Aware Anonymization of Diagnosis Codes
G. Loukides, A. Gkoulalas-Divanis
IEEE Transactions on Biomedical Informatics (TITB), IEEE, 2013

Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness
R.D. Boyce, J.R. Horn, O. Hassanzadeh, A. de Waard, J. Schneider, J.S. Luciano, M. Rastegar-Mojarad, M. Liakata
Journal of Biomedical Semantics 4(1), 5, BioMed Central Ltd, 2013

Evaluation of methods for modeling transcription factor sequence specificity
M.T. Weirauch, A. Cote, R. Norel, M. Annala, Y. Zhao, T.R. Riley, J. Saez-Rodriguez, T. Cokelaer, A. Vedenko, S. Talukder, others
Nature biotechnology, Nature Publishing Group, 2013

Critical assessment of automated flow cytometry data analysis techniques
Nima Aghaeepour, Greg Finak, Holger Hoos, Tim R Mosmann, Ryan Brinkman, Raphael Gottardo, Richard H Scheuermann, others
Nature methods 10(3), 228--238, Nature Publishing Group, 2013

SYSTEM FOR SIMPLIFYING AN XML-BASED SCHEMA
Holly Connor, Ariel Farkash, John TE Timm
US Patent 20,130,018,924

A Markov Prediction Model for Semi-Structured Business Processes
Geetika T. Lakshmanan, Davood Shamsi, Yurdaer Doganata, Merve Unuvar, and Rania Khalaf
Accepted on 8/20/2013 to journal: Knowledge and Information Systems (KAIS)

Semantic trajectories modeling and analysis
C Parent, S Spaccapietra, C Renso, G Andrienko, N Andrienko, V Bogorny, ML Damiani, A Gkoulalas-Divanis, JA Macedo, N Pelekis, others
ACM Computing Surveys (to appear), 2013

iXora: Exact haplotype inferencing and trait association
F. Utro, N. Haiminen, D. Livingstone, O.E. Cornejo, S. Royaert, R. Schnell, J.C. Motamayor, D.N. Kuhn, L. Parida
BMC Genetics 14(1), 48, BioMed Central Ltd, 2013
Abstract

SYSTEM, METHOD AND PROGRAM PRODUCT FOR PROVIDING POPULACE CENTRIC WEATHER FORECASTS
Victor Fernandes Cavalcante, Ricardo Guimaraes Herrmann, Kiran Mantripragada, Marco Aurelio Stelmar Netto, Lucas Correia Villa Real, Cleidson Ronald Botelho De Souza
US Patent 20,130,085,673

SYSTEM, METHOD AND PROGRAM PRODUCT FOR PROACTIVELY PROVISIONING EMERGENCY COMPUTER RESOURCES USING GEOSPATIAL RELATIONSHIPS
Victor Fernandes Cavalcante, Ricardo Guimaraes Herrmann, Kiran Mantripragada, Marco Aurelio Stelmar Netto, Lucas Correia Villa Real, Cleidson Ronald Botelho De Souza
US Patent 20,130,097,249

SYSTEM, METHOD AND PROGRAM PRODUCT FOR FLOOD AWARE TRAVEL ROUTING
Victor Fernandes Cavalcante, Bruno Da Costa Flach, Maira Athanazio De Cerqueira Gatti, Ricardo Guimaraes Herrmann, Kiran Mantripragada, Marco Aurelio Stelmar Netto, Lucas Correia Villa Real, Paula Aida Sesini, Cleidson Ronald Botelho De Souza, Bianca Zadr
US Patent 20,130,116,920

Translational systems biology understanding the limits of animal models as predictors of human biology
Carine Poussin, Leonidas Alexopoulos, Vincenzo Belcastro, Erhan Bilal, Carole Mathis, Pablo Meyer, Raquel Norel, Jeremy J Rice, Gustavo Stolovitzky, Julia Hoeng, others
EMBnet. journal 19(A), p--30, 2013

Processing archive content based on hierarchical classification levels
Karen W Brannon, Wenling Cai, Sangeeta T Doraiswamy, Ryan John Minniear, David A Pease, Mark Andrew Smith
US Patent 8,442,951

Analysis of Watson's Strategies for Playing Jeopardy!
G. Tesauro, D. G. Gondek, J. Lenchner, J. Fan and J. M. Prager
JAIR47, 205-251, 2013
Abstract

Dynamic Collective Work - Guest Editors' Introduction
Geetika T. Lakshmanan, Rania Khalaf and Schahram Dustdar
IEEE Internet Computing, to appear, 2013

Mining of Sensor Data in Healthcare: A Survey
Daby Sow, Deepak S. Turaga, Michael Schmidt
Managing and Mining Sensor Data, pp. 459-504, Springer US, 2013

Efficient in silico Chromosomal Representation of Populations via Indexing Ancestral Genomes
N. Haiminen, F. Utro, C. Lebreton, P. Flament, Z. Karaman, L. Parida
Algorithms 6(3), 430--441, 2013
Abstract

Predictive models for type 2 diabetes onset in middle-aged subjects with the metabolic syndrome
Michal Ozery-Flato, Naama Parush, Tal El-Hay, Zydrune Visockiene, Ligita Rylivskyte, Jolita Badariene, Svetlana Solovjova, Milda Kovaite, Rokas Navickas, Aleksandras Laucevicius
Diabetology \& metabolic syndrome 5(1), 36, BioMed Central Ltd, 2013

50 Years of Object Recognition: Directions Forward
Alexander Andreopoulos, John K. Tsotsos
Computer Vision and Image Understanding 117(8), 827--891, Elsevier, 2013

A Computational Learning Theory of Active Object Recognition Under Uncertainty
Alexander Andreopoulos, John K. Tsotsos
International Journal of Computer Vision 101(1), 95--142, Springer, 2013

FeaFiner: Biomarker Identification from Medical Data through Feature Generalization and Selection
Jiayu Zhou, Zhaosong Lu, Jimeng Sun, Lei Yuan, Fei Wang, Jieping Ye
Proceedings of the 19th ACM SIGKDD international conference on Knowledge discovery and data mining, 2013

Modeling Disease Progression via Multi-task Learning
Jiayu Zhou, Jun Liu, Vaibhav A Narayan, Jieping Ye
NeuroImage, Elsevier, 2013

Patient Risk Prediction Model via Top-k Stability Selection
Jiayu Zhou, Jimeng Sun, Yashu Liu, Jianying Hu, Jieping Ye
SDM, pp. 55--63, 2013

Partitioning Operator Flow Graphs
J. L. Wolf, R. M. Khandekar, D. Rajan, K. W. Hildrum, S. Parekh, K.-L. Wu, B. Gedik, and H. Andrade
US patent 8,490,072

Investigating Clinical Care Pathways Correlated With Outcomes
Geetika Lakshmanan, Szabolcs Rozsnyai, Fei Wang
Proceedings of the 11th International Conference on Business Process Management (BPM), pp. 323--338, Springer, 2013

Predicting Changes in Hypertension Control using Electronic Health Records from a Chronic Disease Management Program
Jimeng Sun, Candace McNaughton, Ping Zhang, Adam Perer, Aris Gkoulalas-Divanis, Joshua Denny, Jacqueline Kirby, Thomas Lasko, Alexander Saip, Bradley Malin
Journal of the American Medical Informatics Association (JAMIA) 21(2), 337--344, BMJ Publishing Group Ltd, 2013
Abstract

Exploring the Relationship Between Drug Side-Effects and Therapeutic Indications
Ping Zhang, Fei Wang, Jianying Hu, Robert Sorrentino
American Medical Informatics Association Annual Symposium (AMIA), 2013
Abstract

Learning by Aggregating Experts and Filtering Novices: A Solution to Crowdsourcing Problems in Bioinformatics
Ping Zhang, Weidan Cao, Zoran Obradovic
BMC Bioinformatics14, 2013
Abstract

Computational Drug Repositioning by Ranking and Integrating Multiple Data Sources
Ping Zhang, Pankaj Agarwal, Zoran Obradovic
European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD), 2013
Abstract

A Method for Identifying Target Patients for New Drugs by Mining Real-world Evidence
Ping Zhang, Fei Wang, Jimeng Sun, Jianying Hu, Shahram Ebadollahi

Abstract

A Method and System for Exploring the Associations Between Drug Side-Effects and Therapeutic Indications
Ping Zhang, Fei Wang, Nan Cao, Jianying Hu, Robert Sorrentino

Abstract

Functionally switchable self-assembled coating compound for controlling translocation of molecule through nanopores (device patent), US Patent Application 20130264219
S. Harrer, A. Afzali-Ardakani, B. Luan, H. Peng, G. A. Stolovitzky, D. Wang

Configuring Cloud Admission Policies under Dynamic Demand
Merve Unuvar, Yurdaer N. Doganata, and Asser N. Tantawi
IEEE 21ST International symposium on modeling, analysis and simulation of computer and telecommunication systems, MASCOT 2013.

A markov prediction model for data-driven semi-structured business processes
Lakshmanan, G., Shamsi, D., Doganata, Y., Unuvar, M., Khalaf, R.
Journal of Knowledge and Information System, 2013


US 8544028 B2: Extracting and processing data from heterogeneous computer applications
Yurdaer N. Doganata, Szabolcs Rozsnyai, Aleksander Slominski

Endogenous factor VIII synthesis from the intron 22-inverted F8 locus may modulate the immunogenicity of replacement therapy for hemophilia A
Gouri Shankar Pandey, Chen Yanover, Lisa M Miller-Jenkins, Susan Garfield, Shelley A Cole, Joanne E Curran, Eric K Moses, Natalia Rydz, Vijaya Simhadri, Chava Kimchi-Sarfaty, others
Nature medicine 19(10), 1318--1324, Nature Publishing Group, 2013

Distinguishing Users By Pointing Performance in Laboratory and Real-World Tasks
Amy Hurst, Scott E Hudson, Jennifer Mankoff, Shari Trewin
ACM Transactions on Accessible Computing (TACCESS) 5(2), 5, ACM, 2013

Semi-Supervised Learning Using Greedy Max-Cut
J Wang, T Jebara, SF Chang
Journal of Machine Learning Research 14( 771-800), 2013
Abstract

Query-Adaptive Image Search with Hash Codes
YG Jiang, J Wang, X Xue, SF Chang
IEEE Transactions on Multimedia 15(2), 442-453, 2013

Large-Scale Video Hashing via Structure Learning
G Ye, D Liu, J Wang, SF Chang
IEEE International Conference on Computer Vision, 2013

Learning Hash Codes with Listwise Supervision
J Wang, W Liu, AX Sun, YG Jiang
IEEE International Conference on Computer Vision, 2013

Comparing apples to oranges: a scalable solution with heterogeneous hashing
Mingdong Ou, Peng Cui, Fei Wang, Jun Wang, Wenwu Zhu, Shiqiang Yang
Proceedings of the 19th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 230-238, 2013

Multiple task learning using iteratively reweighted least square
J Pu, YG Jiang, J Wang, X Xue
Proceedings of the Twenty-Third international joint conference on Artificial Intelligence, pp. 1607-1613, 2013

Metabotropic Glutamate Receptor 1 Expression and Its Polymorphic Variants Associate with Breast Cancer Phenotypes
Madhura S Mehta, Sonia C Dolfi, Roman Bronfenbrener, Erhan Bilal, Chunxia Chen, Dirk Moore, Yong Lin, Hussein Rahim, Seena Aisner, Romona D Kersellius, others
PloS one 8(7), e69851, Public Library of Science, 2013

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge
A. L. Tarca, M. Lauria, M. Unger, E. Bilal, S. Boue, K. Kumar Dey, J. Hoeng, H. Koeppl, F. Martin, P. Meyer, P. Nandy, R. Norel, M. Peitsch, J. J. Rice, R. Romero, G. Stolovitzky, M. Talikka, Y. Xiang, C. Zechner, A. Veliz-Cuba, J. Song, H. Nguyen, M. Zel
Bioinformatics 29(22), 2892--2899, 2013

sbv IMPROVER Diagnostics Signature Challenge: Design and results
Kahn Rhrissorrakrai, J Jeremy Rice, Stephanie Boue, Marja Talikka, Erhan Bilal, Florian Martin, Pablo Meyer, Raquel Norel, Yang Xiang, Gustavo Stolovitzky, others
Systems Biomedicine 1(4), 0--11, Landes Bioscience, 2013

sbv IMPROVER Diagnostic Signature Challenge: Scoring strategies
Raquel Norel, Erhan Bilal, Nathalie Conrad-Chemineau, Richard Bonneau, Alberto de la Fuente, Igor Jurisica, Daniel Marbach, Pablo Meyer, J Jeremy Rice, Tamir Tuller, others
Systems Biomedicine 1(4), 15--23, Landes Bioscience, 2013

Predicting progression of bladder urothelial carcinoma using microRNA expression
Eran Rosenberg, Jack Baniel, Yael Spector, Alexander Faerman, Eti Meiri, Ranit Aharonov, David Margel, Yaron Goren, Ofer Nativ
BJU international, Wiley Online Library, 2013

Novel microRNA-based assay demonstrates 92\% agreement with diagnosis based on clinicopathologic and management data in a cohort of patients with carcinoma of unknown primary
George Pentheroudakis, Nicholas Pavlidis, George Fountzilas, Dimitrios Krikelis, Anna Goussia, Aikaterini Stoyianni, Mats Sanden, Brianna St Cyr, Noga Yerushalmi, Hila Benjamin, others
Molecular cancer 12(1), 57, BioMed Central Ltd, 2013

Gene expression signature for classification of tissue of origin of tumor samples
Ranit Aharonov, Nitzan Rosenfeld, Shai Rosenwald, Nir Dromi
US Patent App. 13/856,190

Optimal design of simultaneous source encoding
Eldad Haber, Kees Van Den Doel, Lior Horesh
2013 - cs.ubc.ca

Accelerating Hessian-Free Optimization for Deep Neural Networks by Implicit Preconditioning and Sampling
Tara N Sainath, Lior Horesh, Brian Kingsbury, Aleksandr Y Aravkin, Bhuvana Ramabhadran
arXiv preprint arXiv:1309.1508, 2013

Experimental design in the context of Tikhonov regularized inverse problems
L. Tenorio, V. Ball, L. Horesh, C. Lucero
Special issue of in honor of E. L. Lehmann, 2013

Towards Improving Personalized Healthcare: Anonymization of Electronic Medical Records to Support Large-Scale Medical Studies
A. Gkoulalas-Divanis, G. Loukides, J. Sun
IBM Journal of Research & Technology, Special Issue on Cybersecurity for a Smarter Planet, IEEE, 2013

Privacy Preservation in Open Data Portals: Research Challenges and Solutions in Designing an Urban Information Management Platform
A. Gkoulalas-Divanis, P. MacAonghusa
IBM Journal of Research & Technology, Special Issue on Cybersecurity for a Smarter Planet, 2013

Permutation-based Sequential Pattern Hiding
R. Gwadera, A. Gkoulalas-Divanis, G. Loukides
IEEE International Conference on Data Mining (ICDM), 2013

Select-Organize-Anonymize: A Framework for Trajectory Data Anonymization
G. Poulis, S. Skiadopoulos, G. Loukides, A. Gkoulalas-Divanis
Privacy Aspects of Data Mining (PADM), 2013

Report from Dagstuhl: the liberation of mobile location data and its implications for privacy research
Gennady L. Andrienko, Aris Gkoulalas-Divanis, Marco Gruteser, Christine Kopp, Thomas Liebig, Klaus Rechert
Mobile Computing and Communications Review 17(2), ACM, 2013

Weakly Supervised Codebook Learning by Iterative Label Propagation with Graph Quantization
Liujuan Cao, Rongrong Ji, Wei Liu, Hongxun Yao, and Qi Tian
Signal Processing 93(8), 2274-2283, Elsevier, 2013

Mining Spatiotemporal Video Patterns towards Robust Action Retrieval
Liujuan Cao, Rongrong Ji, Yue Gao, Wei Liu, and Qi Tian
Neurocomputing 105(1), 61-69, Elsevier, 2013

Nonnegative Local Coordinate Factorization for Image Representation
Yan Chen, Jiemi Zhang, Deng Cai, Wei Liu, and Xiaofei He
IEEE Transactions on Image Processing 22(3), 969-979, IEEE, 2013
PIC top-quality journal (Multimedia)

Semi-Supervised Learning with Manifold Fitted Graphs
Tongtao Zhang, Rongrong Ji, Wei Liu, Dacheng Tao, and Gang Hua
International Joint Conference on Artificial Intelligence (IJCAI), AAAI, 2013
PIC top-quality conference (AI)

Query-Dependent Visual Dictionary Adaptation for Image Reranking
Jialong Wang, Cheng Deng, Wei Liu, Rongrong Ji, Xiangyu Chen, and Xinbo Gao
ACM International Conference on Multimedia (ACM MM), ACM, 2013
PIC top-quality conference (Multimedia)

Visual Reranking through Weakly Supervised Multi-Graph Learning
Cheng Deng, Rongrong Ji, Wei Liu, Dacheng Tao, and Xinbo Gao
IEEE International Conference on Computer Vision (ICCV), IEEE, 2013
PIC top-quality conference (Multimedia, User Interface Technologies)

Learning Hash Codes with Listwise Supervision
Jun Wang, Wei Liu, Andy Sun, and Yu-Gang Jiang
IEEE International Conference on Computer Vision (ICCV), IEEE, 2013
PIC top-quality conference (Multimedia, User Interface Technologies)

Face Recognition via Archetype Hull Ranking
Yuanjun Xiong, Wei Liu, Deli Zhao, and Xiaoou Tang
IEEE International Conference on Computer Vision (ICCV), IEEE, 2013
PIC top-quality conference (Multimedia, User Interface Technologies)

Enabling high-resolution forecasting of severe weather and flooding events in Rio de Janeiro
LA Treinish, AP Praino, JP Cipriani, UT Mello, K Mantripragada, LC Villa Real, PA Sesini, V Saxena, T George, R Mittal
IBM Journal of Research and Development 57(5), 7--1, IBM, 2013

Nanosensors for next generation drug screening
Sridhar K Kannam, Matthew T Downton, Natalie Gunn, Sung Cheol Kim, Priscilla R Rogers, Christine Schieber, Julia S Baldauf, John M Wagner, Daniel Scott, Ross Bathgate, others
SPIE Micro+ Nano Materials, Devices, and Applications, pp. 89230I--89230I, 2013

Single Network Relational Transductive Learning
Amit Dhurandhar and Jun Wang
Journal of Artificial Intelligence Research48, 813-839, 2013

Fast Pairwise Query Selection for Large-scale Active Learning to Rank
Buyue Qian, Xiang Wang, Jun Wang, Hongfei Li, Nan Cao, Weifeng Zhi, Ian Davidson
Proceedings of 13th IEEE International Conference on Data Mining (ICDM), pp. 607-616, 2013

Exploring patient risk groups with incomplete knowledge
Xiang Wang, Fei Wang, Jun Wang, Buyue Qian, Jianying Hu
The IEEE International Conference on Data Mining series, pp. 1223-1228, 2013

Clustering with Complex Constraints - Algorithms and Applications
Weifeng Zhi, Xiang Wang, Buyue Qian, Patrick Butler, Naren Ramakrishnan, Ian Davidson
Proceedings of the 27th AAAI Conference on Artificial Intelligence (AAAI), pp. 1056-1062, 2013

Active Learning from Relative Queries
Buyue Qian, Xiang Wang, Fei Wang, Hongfei Li, Jieping Ye, Ian Davidson
Proceedings of the 23rd International Joint Conference on Artificial Intelligence (IJCAI), pp. 1614-1620, 2013

Exploring Patient Risk Groups with Incomplete Knowledge
Xiang Wang, Fei Wang, Jun Wang, Buyue Qian, Jianying Hu
Proceedings of 13th IEEE International Conference on Data Mining (ICDM), pp. 1223-1228, 2013

Phenomenological theory of a charged polymer molecule in nanosized gap between two fluidic reservoirs
S. Polonsky, V.S.K. Balagurusamy
Europhysics Letters 103 (6), 68007, 2013
Abstract

200 mm Wafer-Scale Integration of Sub-20 nm Sacrificial Nanofluidic Channels for Manipulating and Imaging Single DNA Molecules
C. Wang, S.W. Nam, J.M. Cotte, H. Peng, C.V. Jahnes, D. Wang, R. Bruce, M. Guillorn, L.M. Gignac, W.H. Advocate, C.M. Breslin, M. Brink, J. Bucchignano, E.A. Duch, ..., A. Royyuru, G.A. Stolovitzky, E.G. Colgan, Q. Lin, and S. Polonsky.
International Electron Device Meeting, pp. 369-372, 2013
Abstract

Nanochannel process and structure for bio-detection
E. Colgan, C. Jahnes, S. Polonsky, and J. Bai
Patent filed patent

Detecting dose and focus variations during photolithography
I.M. Elfadel, Y. Liu, S. Polonsky, and A. Singhee

Charged entities as locomotive to control motion of polymers through a nanochannel
S. Harrer, B. Luan, G.J. Martyna, H. Peng, S. Polonsky, S.M. Rossnagel, A.K. Royyuru, G.A. Stolovitzky, and G.F. Walker
Patent US20130068618A1

Semiconductor devices having nanochannels confined by nanometer-spaced electrodes
S. Harrer, S. Polonsky, M.B. Ketchen, and J.A. Ott

Controlled method for fabrication of nano-pipets.
J.A. Ott, S. Harrer, and S. Polonsky
Patent filed patent

Nanopore capture system
S. Polonsky, A. Afzali-Ardakani, H. Peng, G.A. Stolovitzky, A.A. Royyuru, M.N. Wegman
US Patent App. 12/757,433

Sequencing by pulling a DNA molecule out of water and measuring force-displacement curve
S. Polonsky and V.K. Balagurusamy
Patent filed patent


Patient risk stratification by combining knowledge-driven and data-driven insights
Xiang Wang, Fei Wang, Jianying Hu, Jun Wang, Buyue Qian

Data-driven exploration of care plans for patients
Adam Perer, David Gotz
CHI'13 Extended Abstracts on Human Factors in Computing Systems, pp. 439--444, 2013

Risk Information Extraction and Aggregation: Experimenting with Medline Abstracts
Deleris L.A., S. Deparis, B. Sacaleanu and L. Tounsi
ADT 2013

Impact of Noise Reduction and Spectrum Estimation on Noise Robust Speaker Identification
Keith W. Godin, Seyed Omid Sadjadi, and John H.L. Hansen
Proc. INTERSPEECH, pp. 3656-3660, 2013


Similarity retrieval of angiogram images BASED on a flexible shape model
Tanveer Syeda-Mahmood, Colin B Compas, David Beymer, Ritwik Kumar
Functional Imaging and Modeling of the Heart, pp. 97--105, Springer, 2013

Dydruma: A Dynamic Drug Map for Exploring the Associations Among Drug Therapeutic Indications and Side-Effects
Fei Wang, Ping Zhang, Nan Cao, Jianying Hu, Robert Sorrentino
AMIA Workshop on Visual Analytics in Healthcare (VAHC), 2013
Abstract

PDS Cloud: Long Term Digital Preservation in the Cloud
Simona Rabinovici-Cohen, John Marberg, Kenneth Nagin, David Pease
Proceedings of the IEEE International Conference on Cloud Engineering (IC2E), pp. 38--45, 2013

ENSURE: Long term digital preservation of Health Care, Clinical Trial and Financial data
M Braud, O Edelstein, J Rauch, S Rabinovici-Cohen, J Marberg, K Nagin, D Voets, I Sanya, F Randers, A Droppert, M Klecha
Proceedings of 10th International Conference on Preservation of Digital Objects (iPRES) , iPRES, 2013

Access control over multicast
Boaz Carmeli, John Justin Duigenan, Michael Damein Elder, Gidon Gershinsky
US Patent 8,369,527

GapFlow: Visualizing Gaps in Care for Medical Treatment Plans
David Gotz, Nan Cao, Esther Goldbraich, Boaz Carmeli
IEEE Visualization conference, 2013

Analyzing the “CareGap”: Assessing Gaps in Adherence to Clinical Guidelines in Adult Soft Tissue Sarcoma
Zeev Waks, Esther Goldbraich, Ariel Farkash, Michele Torresani, Rossella Bertulli, Nicola Restifo, Paolo Locatelli, Paolo Casali, Boaz Carmeli
Data and Knowledge for Medical Decision Support: Proceedings of the EFMI Special Topic Conference, 17-19 April 2013, Prague, Czech Republic, pp. 46

Method and apparatus for workflow validation and execution
Ehud Aharoni, Ya'ara Goldschmidt, Tamar Lavee, Hani Neuvirth-Telem
US Patent App. 14/093,092

A Model-Driven Approach to Clinical Practice Guidelines Representation and Evaluation Using Standards
Ariel Farkash, John TE Timm, Zeev Waks
MEDINFO 2013: Proceedings of the 14th World Congress on Medical and Health Informatics, pp. 200

An Efficacy Driven Approach for Medication Recommendation in Type 2 Diabetes Treatment Using Data Mining Techniques
Haifeng Liu, Guotong Xie, Jing Mei, Weijia Shen, Wen Sun, Xiang Li.
Proceedings of the 14th World Congress on Medical and Health Informatics (MedInfo 2013)

CLASSIFICATION RELIABILITY PREDICTION
Ruty Rinott, Noam Slonim, Aharoni Ehud
US Patent 20,130,218,813

A Gaussian process guided particle filter for tracking 3D human pose in video
Suman Sedai, Mohammed Bennamoun, Du Q Huynh
IEEE Transaction on Image Processing, IEEE, 2013

3D human pose tracking using Gaussian process regression and particle filter applied to gait analysis of Parkinson's disease patients
S Sedai, M Bennamoun, DQ Huynh, A El-Sallam, S Foo, J Alderson, C Lind
Industrial Electronics and Applications (ICIEA), 2013 8th IEEE Conference on, pp. 1636--1642

WalkMinder: encouraging an active lifestyle using mobile phone interruptions
Sen H Hirano, Robert G Farrell, Catalina M Danis, Wendy A Kellogg
CHI'13 Extended Abstracts on Human Factors in Computing Systems, pp. 1431--1436, 2013

Targeting and Refining Health Challenges to Improve Medical Adherence
Robert Farrell, Catalina Danis, Kerry Shih-Ping Chang
Medical Informatics Update 2013: Analytics and Tools for Care Coordination

Patient Engagement: Measuring Technology Impact on Care Outcomes
Mary Minnitti, Rosemary Kennedy, Catalina Danis, Marion Ball, Robert Farrell, et al.
Medical Informatics Update 2013: Analytics and Tools for Care Coordination


Anonymizing data with relational and transaction attributes
Giorgos Poulis, Grigorios Loukides, Aris Gkoulalas-Divanis, Spiros Skiadopoulos
Machine Learning and Knowledge Discovery in Databases, pp. 353--369, Springer, 2013

Distance-Based k\^ m-Anonymization of Trajectory Data
Giorgos Poulis, Spiros Skiadopoulos, Grigorios Loukides, Aris Gkoulalas-Divanis
Mobile Data Management (MDM), 2013 IEEE 14th International Conference on, pp. 57--62

Hiding Sensitive Patterns from Sequence Databases: Research Challenges and Solutions
Grigorios Loukides, Aris Gkoulalas-Divanis
Mobile Data Management (MDM), 2013 IEEE 14th International Conference on, pp. 45--50

Preventing Re-identification While Supporting GWAS
Aris Gkoulalas-Divanis, Grigorios Loukides
Anonymization of Electronic Medical Records to Support Clinical Analysis, pp. 39--53, Springer, 2013

Re-identification of Clinical Data Through Diagnosis Information
Aris Gkoulalas-Divanis, Grigorios Loukides
Anonymization of Electronic Medical Records to Support Clinical Analysis, pp. 31--38, Springer, 2013

Overview of Patient Data Anonymization
Aris Gkoulalas-Divanis, Grigorios Loukides
Anonymization of Electronic Medical Records to Support Clinical Analysis, pp. 9--30, Springer, 2013

Groupwise segmentation with multi-atlas joint label fusion
Hongzhi Wang, Paul A Yushkevich
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2013, pp. 711--718, Springer

Multi-atlas Segmentation without Registration: A Supervoxel-Based Approach
Hongzhi Wang, Paul A Yushkevich
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2013, pp. 535--542, Springer

Multi-Atlas Segmentation with Joint Label Fusion-A Open Source Implementation
Hongzhi Wang, Paul Yushkevich
Frontiers in Neuroinformatics, 0, Frontiers, 2013

Dynamics of oscillators coupled by a medium with adaptive impact
Roozbeh Daneshvar
Complexity 18(4), 41--54, Wiley Online Library, 2013

Virtual Machine-to-Image Affinity on a Physical Server
Salman A Baset, Michael J Fork, Alexei A Karve, Sambit Sahu
US Patent App. 13/770,105

Hartigan's K-means versus Lloyd's K-means: is it time for a change?
Noam Slonim, Ehud Aharoni, and Koby Crammer
Proceedings of the Twenty-Third international joint conference on Artificial Intelligence (IJCAI), pp. 1677-1684 , AAAI Press, 2013

Random number generation
James R Kozlosk, Robert K Montoye, Raquel Norel, John J Rice
US Patent App. 13/967,367

Human emotion metrics for navigation plans and maps
Paul B French, Eric Thiebaut-George, Niall Jude Lucey, Edith Helen Stern, Michael Truss
US Patent 8,364,395

Methods and apparatus for complementing user entries associated with events of interest through context
Maria Rene Ebling, Edith Helen Stern, Pnina Vortman
US Patent 8,494,928

System and method for verifying access to content
Patrick Joseph O'sullivan, Robert Cameron Weir, Edith Helen Stern, Barry E Willner
US Patent 8,359,355

System and method for caching linked email data for offline use
Patrick Joseph O'sullivan, Edith Helen Stern, Robert Cameron Weir, Barry E Willner
US Patent 8,386,573

Guest Editors' Introduction to Practical Parallel EDA
Rasit O. Topaloglu, Bevan Baas
IEEE Design & Test, 2013

Chip-scale physical interconnect models (Tutorial)
Rasit O. Topaloglu
ACM/IEEE SLIP, 2013

Interferometry-based characterization of chip-scale topography for advanced semiconductor nodes
R. O. Topaloglu, P. Vukkadala, R. Venigalla, B. J. Morgenfeld, R. Ramkhalawon, J. K. Sinha, N. Lustig, S. Greco,
International Conference on Planarization/CMP Technology, 2013

Spatio-temporal approach to scheduling field operations
Mehmet F Candas, Arun Hampapur, Tarun Kumar, Shilpa N Mahatma
US Patent App. 13/836,785

Automatic filtering of sem images
Maria Gabrani, Virginia Estellers
US Patent App. 13/853,123


Layout Assessment Method and System
Nathalie Casati, David DeMaris, Frank De Morsier, Virginia Estellers Casas, Maria Gabrani

Surface reconstruction from microscopic images in optical lithography
Virginia Estellers Casas, Jean-Philippe Thiran, Maria Gabrani
Technical Report EPFL-ARTICLE-183188, 2013



Motif simplification: improving network visualization readability with fan, connector, and clique glyphs
Cody Dunne, Ben Shneiderman
Proceedings of the SIGCHI Conference on Human Factors in Computing Systems, pp. 3247--3256, 2013

Pronoun use reflects standings in social hierarchies
Ewa Kacewicz, James W Pennebaker, Matthew Davis, Moongee Jeon, Arthur C Graesser
Journal of Language and Social Psychology, 0261927X13502654, SAGE Publications, 2013

Recognizing human activities from partially observed videos
Yu Cao, Daniel Barrett, Andrei Barbu, Siddharth Narayanaswamy, Haonan Yu, Aaron Michaux, Yuewei Lin, Sven Dickinson, Jeffrey Mark Siskind, Song Wang
Computer Vision and Pattern Recognition (CVPR), 2013 IEEE Conference on, pp. 2658--2665


Motion analysis for human interaction detection using optical flow on lattice superpixels
Peng Zheng, Yu Cao, Song Wang
Wuhan University Journal of Natural Sciences 18(2), 109--116, Springer, 2013

Discovering linkage points over web data
Oktie Hassanzadeh, Ken Q Pu, Soheil Hassas Yeganeh, Ren\'ee J Miller, Lucian Popa, Mauricio A Hern\'andez, Howard Ho
Proceedings of the VLDB Endowment 6(6), 445--456, VLDB Endowment, 2013

Next Generation Data Analytics at IBM Research
Oktie Hassanzadeh, Anastasios Kementsietsidis, Benny Kimelfeld, Rajasekar Krishnamurthy, Fatma Ozcan, Ippokratis Pandis
PVLDB 6(11), 1174-1175, VLDB Endowment, 2013

Ultrasound RF time series for tissue typing: first in vivo clinical results
Mehdi Moradi, S Sara Mahdavi, Guy Nir, Edward C Jones, S Larry Goldenberg, Septimiu E Salcudean
SPIE Medical Imaging, pp. 86701I--86701I, 2013

Statistical unit root test for edge detection in ultrasound images of vessels and cysts
Mehdi Moradi, S Sara Mahdavi, Julian Guerrero, Robert Rohling, Septimiu E Salcudean
Journal of Electronic Imaging 22(3), 033013--033013, International Society for Optics and Photonics, 2013

Model selection and estimation of multi-compartment models in diffusion mri with a rician noise model
Xinghua Zhu, Yaniv Gur, Wenping Wang, P Thomas Fletcher
Information Processing in Medical Imaging (IPMI), pp. 644--655, 2013

Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI
Alessandro Daducci, E Canales-Rodriguez, Maxime Descoteaux, Y Gur, M Mani, et al.
IEEE Transactions on Medical Imaging (TMI), IEEE, 2013

Automated segmentation and geometrical modeling of the tricuspid aortic valve in 3D echocardiographic images
Alison M Pouch, Hongzhi Wang, Manabu Takabe, Benjamin M Jackson, Chandra M Sehgal, Joseph H Gorman III, Robert C Gorman, Paul A Yushkevich
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2013, pp. 485--492, Springer

Adolescents in psychodynamic psychotherapy: Changes in internal representations of relationships with parents
Dana Atzil Slonim, Gaby Shefler, Noam Slonim, and Orya Tishby
Psychotherapy Research 23(2), 201-217, Taylor & Francis Group, 2013

Estimating the Impact of Prevention Action: A simulation Model of Cervical Cancer Progression.
Michal Rosen-Zvi, Lavi Shpigelman, Alan Kalton, Omer Weissbrod, Saheed Akindeinde, Soren Benefeldt, Andrew Bentley, Terry Everett, Joseph Jajinskiji, Emmanuel Kweyu, others
Proceedings of MIE2014205, 288--292, 2013

IBM Research at ImageCLEF 2013 Medical Tasks
Mani Abedini, Liangliang Cao, Noel Codella, Jonathan H. Connell, Rahil Garnavi, Amir Geva, Michele Merler, Quoc-Bao Nguyen, Sharathchandra U. Pankanti, John R. Smith, Xingzhi Sun, and Asaf Tzadok
ImageCLEFmed Medical Image Retrieval Workshop at AMIA 2013

Enabling Person-Centric Care using Linked Data Technologies.
Spyros Kotoulas, Walter Sedlazek, Vanessa Lopez, Marco Sbodio, Martin Stephenson, Pierpaolo Tommasi, Pol Mac Aonghusa
Studies in health technology and informatics205, 692--696, 2013

Case Study on Electronic Medical Records Data
Aris Gkoulalas-Divanis, Grigorios Loukides
Anonymization of Electronic Medical Records to Support Clinical Analysis, pp. 55--64, Springer, 2013

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach
P. Meyer, G. Siwo, D. Zeevi, E. Sharon, R. Norel, E. Segal, G. Stolovitzky, G. Siwo, A. K. Rider, A. Tan, R. S. Pinapati, S. Emrich, N. Chawla, M. T. Ferdig, Y. A. Tung, Y. S. Chen, M. J. Chen, C. Y. Chen, J. M. Knight, S. M. Sahraeian, M. S. Esfahani, R.
Genome Res. 23(11), 1928--1937, 2013

Method for Identifying Group- and Individual-level Risk Factors via Risk-driven Patient Stratification
P. Hsiao, J. Sun, D. Gotz, J. Hu

A Method and System of Using Wearable Camera and Data Analytics Device to Support Personal Eye Care Post Ophthalmological Operation
X. Zhu, H. Chang, P. Hsueh, L. Chang, Y. Wang, N. Wu, S. Ramakrishnan, J. Lu.

Context-aware medicine taking guidance using selectable local information tags
J. Chen, S. Huang, Y. Huang, R. Lin, H. Chang, P. Hsueh

" Method and System to develop health information feature abstractions emphasizing heteroscedasticity for enabling monitoring/managing of intervention
P. Hsueh, S. Ramakrishnan, K. Yu, P. Mooiweer, M. Akushevich, S. Shama

Personalized Healthcare and Adherence: Issues and Challenges
Hsueh, P., M. Ball, V. Patel, B. Shen
The 14th World Congress on Medical and Health Informatics (MEDINFO 2013)

Predicting Disease Progression and Comorbidity Development: A Case Study in Data Collection for Diabetes Risk Assessment.
Hsueh, P., M. Hsiao, S. Lee, X. Zhu, S. Ramakrishnan
Frontiers in Service 2013

An adaptable and scalable group access control scheme for managing wireless sensor networks
Wu, F., Pai, H.-T., Zhu, X., Hsueh, P.-Y., Hu, Y.-H
Telematics and Informatics, vol. 30, no. 2, pp. 144-157, 2013.

High-Frequency QRS Analysis in Patients with Acute Myocardial Infarction: A Preliminary Study
Guy Amit, Ori Galante, Linda R Davrath, Oded Luria, Shimon Abboud, Doron Zahger
Annals of Noninvasive Electrocardiology 18(2), 149--156, Wiley Online Library, 2013

High-frequency QRS analysis improves the specificity of exercise ECG testing in women referred for angiography
David Rosenmann, Yaakov Mogilevski, Guy Amit, Linda R Davrath, Dan Tzivoni
Journal of Electrocardiology 46(1), 19--26, Elsevier, 2013

The cost-effectiveness of stress testing using high-frequency QRS analysis
Guy Amit, Yizhar Toren, Linda R Davrath, Eran Toledo, Shimon Abboud
International Journal of Medical Engineering and Informatics 5(1), 68--80, Inderscience, 2013

3D Superalloy Grain Segmentation Using a Multichannel Edge-Weighted Centroidal Voronoi Tessellation Algorithm
Yu Cao, Lili Ju, Youjie Zhou, Song Wang
Image Processing, IEEE Transactions on 22(10), 4123--4135, IEEE, 2013

Collective ontology alignment.
Jason B Ellis, Oktie Hassanzadeh, Kavitha Srinivas, Michael J Ward
OM, pp. 219--220, 2013

Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness.
Richard D Boyce, John R Horn, Oktie Hassanzadeh, Anita de Waard, Jodi Schneider, Joanne S Luciano, Majid Rastegar-Mojarad, Maria Liakata
J. Biomedical Semantics4, 5, 2013

Incorporating feature ranking and evolutionary methods for the classification of high-dimensional DNA microarray gene expression data
Mani Abedini, Michael Kirley, Raymond Chiong
The Australasian medical journal 6(5), 272, Australasian Medical Journal, 2013

IBM Research at ImageCLEF 2013 Medical Tasks
Mani Abedini, Liangliang Cao, Noel Codella, Jonathan H. Connell, Rahil Garnavi, Amir Geva, Michele Merler, Quoc- Bao Nguyen, Sharathchandra U. Pankanti, John R. Smith, Xingzhi Sun, and Asaf Tzadok
American Medical Informatics Association, 2013

Taming Complex Healthcare Data Models with Dictionary Tooling
John T. E. Timm, Joshua Hui, Sarah Knoop, and Peter Schwarz,
Proceedings of 5th International Workshop on Software Engineering in Health Care (SEHC), 2013
Abstract

Mining Discriminative Subgraphs from Global-State networks
Sayan Ranu, Minh Hoang, Ambuj Singh
SIGKDD, 2013

The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color
J.C. Motamayor*, K. Mockaitis*, J. Schmutz*, N. Haiminen*, D. Livingstone, O.E. Cornejo, S. Findley, P. Zheng, F. Utro, S. Royaert, C. Saski, J. Jenkins, R. Podicheti, M. Zhao, B. Scheffler, others
Genome Biology 14(6), R53, BioMed Central Ltd, 2013
Abstract

Multiple Kernel Completion and Its Application to Cardiac Disease Discrimination
Ritwik Kumar, Chen Ting, Moritz Hardt, David Beymer, Karen Brannon & Tanveer Syeda-Mahmood
IEEE International Symposium on Biomedical Imaging, pp. 764--767, 2013

PSAR: Predictive Space Aggregated Regression and Its Application in Valvular Heart Disease Classification
Chen Ting, Ritwik Kumar, Guillaume Axel Troianowski, Tanveer Syeda-Mahmood, David Beymer & Karen Brannon
IEEE International Symposium on Biomedical Imaging, pp. 1122--1125, 2013

Extending the "Web of Drug Identity" with Knowledge Extracted from United States Product Labels
Oktie Hassanzadeh, Qian Zhu, Robert R. Freimuth, Richard D. Boyce
Proceedings of the 2013 AMIA Summit on Translational Bioinformatics

BlueSNP: R package for highly scalable genome-wide association studies using Hadoop clusters
H. Huang, S. Tata, R.J. Prill
Bioinformatics 29(1), 135--136, Oxford Univ Press, 2013

A Framework for Mining Signatures from Event Sequences and Its Applications in Healthcare Data
Fei Wang, Noah Lee, Jianying hu, Jimeng Sun, Shahram Ebadollahi
IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI) 35(2), 272-285, IEEE, 2013

Taming Complex Healthcare Data Models with Dictionary Tooling
John T. E. Timm, Joshua Hui, Sarah Knoop, and Peter Schwarz
5th International Workshop on Software Engineering in Health Care (SEHC), 2013
Abstract


2012

Preface: Technologies for healthcare transformation
Chen-Ritzo, Ching-Hua and Hu, Jianying
IBM Journal of Research and Development 56(5), 0--1, IBM, 2012
Abstract

A computational model of the topographic distribution of ventilation in healthy human lungs
Swan, Annalisa J and Clark, Alys R and Tawhai, Merryn H
Journal of Theoretical Biology300, 222--231, Elsevier, 2012
Abstract

Integration of Multiple Annotators by Aggregating Experts and Filtering Novices
Ping Zhang, Zoran Obradovic
IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2012
Abstract

Semi-Supervised Learning on Single-View Datasets by Integration of Multiple Co-Trained Classifiers
Jelena Slivka*, Ping Zhang*, Aleksandar Kovacevic, Zora Konjovic, Zoran Obradovic (*Co-First Author)
International Conference on Machine Learning and Applications (ICMLA), 2012
Abstract

Clustering a collection using an inverted index of features
Danish Contractor, Thomas Hampp-Bahnmueller, Sachindra Joshi, Raghuram Krishnapuram, Kenney Ng

Preservation of digital content
S Cohen, E Henis, S Ronen
US Patent 8,214,336

On the Support of Flexible Patient Privacy Policies in Social-Medical Discovery
Haggai Roitman, Sivan Yogev, Yevgenia Tsimerman, Yardena Peres
24th International Conference of the European Federation for Medical Informatics (MIE) , [Social-Medial Discovery, Privacy], 2012


Question answering in natural language narratives using symbolic probabilistic reasoning
H Hajishirzi, E T Mueller
Proceedings of the Twenty-Fifth International Florida Artificial Intelligence Research Society Conference, 2012

Assessing Disclosure Risk and Data Utility Trade-off in Transaction Data Anonymization
G. Loukides, A. Gkoulalas-Divanis, J. Shao
International Journal of Software Informatics, Special Issue 6(3), 399-417, 2012

Utility-preserving transaction data anonymization with low information loss
G Loukides, A Gkoulalas-Divanis
Expert Systems with Applications, Elsevier, 2012

Private-HERMES: A Benchmark Framework for Privacy-Preserving Mobility Data Querying and Mining Methods
N Pelekis, A Plemenos, A Gkoulalas-Divanis, D Kopanaki, M Vodas, Y Theodoridis
Divanis... - 2012 - edbt.org

Occupancy detection in commercial buildings using opportunistic context sources
S.K. Ghai, L.V. Thanayankizil, D.P. Seetharam, D. Chakraborty
IEEE International Conference on Pervasive Computing and Communications Workshops (PERCOM Workshops), pp. 463--466, 2012

Personalized Adherence Activity Recognition via Model-driven Sensor Data Assessment
Mark Hsiao, Pei-yun Hsueh and Sreeram Ramakrishnan
Proceedings of the 24th European Medical Informatics Conference (MIE 2012)

An Adaptable and Scalable Group Access Control Scheme for Managing Wireless Sensor Network
Fan Wu, Hao-Ting Pai, Xinxin Zhu, Pei-Yun Hsueh, Ya-Han Hu
Telematics and Informatics, Elsevier, 2012

Business Process Insight: An Approach and Platform for the Discovery and Analysis of End-to-End Business Processes
Szabolcs Rozsnyai, Geetika T. Lakshmanan, Vinod Muthusamy, Rania Khalaf and Matthew J. Duftler
Service Research and Innovation Institute (SRII) Global Conference, pp. 80--89, 2012

Assessing the Health of Case-Oriented Semi-Structured Business Processes
Geetika T. Lakshmanan, Nirmal K. Mukhi, Rania Khalaf, Axel Martens, and Szabolcs Rozsnya
IEEE Services Computing Conference, pp. 499--506, 2012

Privacy-Preserving Medical Data Sharing
A. Gkoulalas-Divanis, G. Loukides
SDM Tutorial, 2012

Utility-guided Clustering-based Transaction Data Anonymization
A. Gkoulalas-Divanis, G. Loukides
Transactions on Data Privacy5, 2012

Analyzing clinical data in XML: bridging the gaps
Joshua Hui, Sarah Knoop, Peter Schwarz
Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium, pp. 843--846, 2012

MALSAR: Multi-tAsk Learning via StructurAl Regularization
J. Zhou, J. Chen, J. Ye
2012 - public.asu.edu

Levodopa and the feedback process on set-shifting in parkinson's disease
W.L. Au, J. Zhou, P. Palmes, Y.Y. Sitoh, L. Tan, J.C. Rajapakse
Human brain mapping, Wiley Online Library, 2012

A New Model for Collaboration: Building CDA Documents in MDHT
Sondra Renly, Rita Altamore, Lisa Nelson, Anna Orlova, Sarah Quaynor, Kendal Patterson, Lori Reed-Fourquet, John Timm
American Medical Informatics Association (AMIA), 2012

EWNI: Efficient Anonymization of Vulnerable Individuals in Social Networks
F. Nagle, L. Singh, A. Gkoulalas-Divanis
Advances in Knowledge Discovery and Data Mining, 359--370, Springer, 2012

Feedback control of dimensions in nanopore and nanofluidic devices, US Patent Application 20120103821A1 and WO Patent Application 2012059251
S. Harrer, S. M. Rossnagel, P. S. Waggoner

Automatic Detection of Inconsistencies between Free Text and Coded data in Sarcoma Discharge letters,
R Rinott, M Torresani, R Bertulli, A Goldsteen, P Casali, B Carmeli and N Slonim
24th International Conference of the European Federation for Medical Informatics (MIE), 2012

Advanced Case Management Enabled by Business Provenance
A. Martens, A. Slominski, G.T. Lakshmanan, N. Mukhi
Web Services (ICWS), 2012 IEEE 19th International Conference on, pp. 639--641

Wisdom of crowds for robust gene network inference
D. Marbach, J.C. Costello, R. Kuffner, N.M. Vega, R.J. Prill, D.M. Camacho, K.R. Allison, The DREAM5 Consortium, M. Kellis, J.J. Collins, G. Stolovitzky
Nature Methods, Nature Publishing Group, 2012


Semi-Supervised Hashing for Large Scale Search
J. Wang and S. Kumar and S.-F. Chang
IEEE Trans. on Pattern Analysis and Machine Intelligence, 2012
Abstract

Cascade Model with Dirichlet Process for Analyzing Multiple Dyadic Matrices
H. Yang and J. Wang and A. Mojsilovic
Journal of Applied Statistics, 2012

Fast Semantic Diffusion for Large Scale Context-Based Image and Video Annotation
Y. G. Jiang and Qi Dai and J. Wang and C.-W. Ngo and X. Xue and S.-F. Chang
IEEE Trans. on Image Processing, 2012

Scalable Graph-Based Semi-Supervised Learning,
W. Liu, and J. Wang and S.-F. Chang
Proceedings of the IEEE, 2012

Fast Graph Construction Using Auction Algorithm
J. Wang and Y. Xiang
The Conference on Uncertainty in Artificial Intelligence, 2012

Compact Hyperplane Hashing with Bilinear Functions
W. Liu and J. Wang and Y. Mu and S. Kumar and S.-F. Chang
The 29th International Conference on Machine Learning, 2012

Supervised Hashing with Kernels
W. Liu and J. Wang and R. Ji and Y.-G. Jiang and S.-F. Chang
IEEE Int. Conf. on Computer Vision and Pattern Recognition, 2012

Legislative Prediction via Random Walks over a Heterogeneous Graph
J. Wang and K. R. Varshney and A. Mojsilovic
SIAM International Conference on Data Mining, 2012

Decision Trees for Heterogeneous Dose-Response Signal Analysis
K. R. Varshney, M. Singh, J. Wang
IEEE Statistical Signal Processing Workshop, 2012

A clinical research analytics toolkit for cohort study.
Y. Yu, Y. Zhu, X. Sun, Y. Tao, S. Zhang, L. Xu, Y. Pan
Studies in health technology and informatics180, 1141, 2012

WORKFLOW VALIDATION AND EXECUTION
Ehud Aharoni, Yaara Goldschmidt, Tamar Lavee, Hani Neuvirth-telem
US Patent 20,120,227,047

Flexible medical image management using service-oriented architecture.
Shaham O, Melament A, Barak-Corren Y, Kostirev I, Shmueli N, Peres Y
Studies in health technology and informatics180, 1000, 2012
Abstract

A Convex Formulation for Learning from Crowds
Hiroshi Kajino, Yuta Tsuboi, and Hisashi Kashima
Processings of 26th AAAI Conference on Artificial Intelligence (AAAI), 2012

Learning from Crowds and Experts
Hiroshi Kajino, Yuta Tsuboi, Issei Sato, Hisashi Kashima
Proceedings of the 4th Human Computation Workshop, 2012

Knowledge-Analytics Synergy in Clinical Decision Support
N Slonim, B Carmeli, A Goldsteen, O Keller, C Kent, and R Rinott
24th International Conference of the European Federation for Medical Informatics (MIE), pp. 703--707, 2012

Case-based reasoning in comparative effectiveness research
Marianthi Markatou, Prabani Kuruppumullage Don, Jianying Hu, Fei Wang, Jimeng Sun, Robert Sorrentino, Shahram Ebadollahi
IBM Journal of Development and Research 56(5), 4:1-4:12, IBM, 2012

Combining Knowledge and Data Driven Insights for Identifying Risk Factors using Electronic Health Records
J. Sun, J. Hu, D. Luo, M. Markatou, F. Wang, S. Edabollahi, S.E. Steinhubl, Z. Daar, W.F. Stewart
AMIA, 2012

Real-time analysis for short-term prognosis in intensive care
DM Sow, J. Sun, A. Biem, J. Hu, ML Blount, S. Ebadollahi
IBM Journal of Research and Development 56(5), 3--1, IBM, 2012


Matching Cross-Resolution Face Images Using Co-Transfer Learning
H. Bhat, R. Singh, M. Vatsa, N. Ratha
IEEE ICIP, IEEE, 2012

Cardiac Anatomy as a Biometric
N Codella, J Connell, N Ratha
IEEE ICIP, IEEE, 2012

Fusing Biographical and Biometric Classifiers for Improved Person Identification
V Tyagi, H K Prasad, T Faruquie, L. V Subramaniam, N Ratha
IEEE/IAPR ICPR, IEEE, 2012

DNA motion control based on nanopore with organic coating forming transient bonding to DNA, US Patent Application US 2012/0193235A1
A. Afzali-Ardakani, S. Harrer, B. Luan, G. J. Martyna, H. Peng, S. M. Rossnagel, A. K. Royyuru, G. Stolovitzky, P. S. Waggoner

Dynamics of DNA translocation in a solid-state nanopore immersed in aqueous glycerol
B. Luan, D. Wang, R. Zhou, S. Harrer, H. Peng, G. Stolovitzky
Nanotechnology 23(45), 455102, IOP Publishing, 2012

Cross-domain collaboration recommendation
Jie Tang, Sen Wu, Jimeng Sun, Hang Su
Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 1285--1293, 2012

Fast Random Walk Graph Kernel
U. Kang, H. Tong, J. Sun
SIAM International Conference on Data Mining (SDM), 2012

Content-based and time-evolving social network analysis
C.Y. Lin, S. Papadimitrion, J. Sun, K.L. Wu, others
US Patent 8,204,988

gbase: an efficient analysis platform for large graphs
U. Kang, H. Tong, J. Sun, C.Y. Lin, C. Faloutsos
The VLDB Journal, 1--14, Springer, 2012

ICDA: A Platform for Intelligent Care Delivery Analytics
David Gotz, Harry Starvropoulos, Jimeng Sun, Fei Wang
American Medical Informatics Association Annual Symposium (AMIA), 2012

Latent Association Analysis of Document Pairs
Gengxin Miao, Ziyu Guan, Louise Moser, Xifeng Yan, Shu Tao, Nikos Anerousis, Jimeng Sun
The 18th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining (KDD), pp. 1415--1423, 2012

SympGraph: a framework for mining clinical notes through symptom relation graphs
P. Sondhi, J. Sun, H. Tong, C.X. Zhai
Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 1167--1175, 2012

MatrixFlow: Temporal Network Visual Analytics to Track Symptom Evolution during Disease Progression
Adam Perer, Jimeng Sun
AMIA, pp. 716, American Medical Informatics Association, 2012

Leveraging medical thesauri and physician feedback for improving medical literature retrieval for case queries
P. Sondhi, J. Sun, C.X. Zhai, R. Sorrentino, M.S. Kohn
Journal of the American Medical Informatics Association 19(5), 851--858, BMJ Publishing Group Ltd, 2012

GenomicTools: an open source platform for developing high-throughput analytics in genomics
A Tsirigos, N Haiminen, E Bilal, F Utro
In Open source software in life science research: Practical solutions to common challenges in the pharmaceutical industry and beyond, Woodhear Publishing, 2012

Data Management Issues on the Semantic Web
O. Hassanzadeh, A. Kementsietsidis, Y. Velegrakis
Data Engineering (ICDE), 2012 IEEE 28th International Conference on, pp. 1204--1206

AGGREGATING SEARCH RESULTS BASED ON ASSOCIATING DATA INSTANCES WITH KNOWLEDGE BASE ENTITIES
S. Duan, A.B. Fokoue-nfoutche, O. Hassanzadeh, A. Kementsietsidis, K. Srinivas, M.J. Ward
US Patent 20,120,246,154

ANNOTATING SCHEMA ELEMENTS BASED ON ASSOCIATING DATA INSTANCES WITH KNOWLEDGE BASE ENTITIES
S. Duan, A.B. Fokoue-nkoutche, O. Hassanzadeh, A. Kementsietsidis, K. Srinivas, M.J. Ward
US Patent 20,120,246,175

ANNOTATING SCHEMA ELEMENTS BASED ASSOCIATING DATA INSTANCES WITH KNOWLEDGE BASE ENTITIES
S. DUAN, A. FOKOUE-NFOUTCHE, O. HASSANZADEH, A. KEMENTSIETSIDIS, K. SRINIVAS, M. WARD, others
WO Patent 2,012,129,152

Instance-Based Matching of Large Ontologies Using Locality-Sensitive Hashing
S. Duan, A. Fokoue, O. Hassanzadeh, A. Kementsietsidis, K. Srinivas, M. Ward
The Semantic Web--ISWC 2012, 49--64, Springer

QuerioCity: A Linked Data Platform for Urban Information Management
Vanessa L\'{o}pez, Spyros Kotoulas, Marco Luca Sbodio, Martin Stephenson, Aris Gkoulalas-Divanis, Pol Mac Aonghusa
The Semantic Web - ISWC 2012 - 11th International Semantic Web Conference, Boston, MA, USA, November 11-15, 2012, Proceedings, Part II, pp. 148--163

A Framework for Mobility Pattern Mining and Privacy-Aware Querying of Trajectory Data
D. Kopanaki, N. Pelekis, A. Gkoulalas-Divanis, M. Vodas, Y. Theodoridis
Divanis, M Vodas... - 2012 - uhasselt.be

Anonymization of Electronic Medical Records to Support Clinical Analysis
A. Gkoulalas-Divanis, G. Loukides
Divanis, G Loukides - 2012 - books.google.com, Springer-Verlag New York Incorporated

Quantitative modeling of the terminal differentiation of B cells and mechanisms of lymphomagenesis
M. Rodríguez-Martínez, A. Corradin, U. Klein, M.J. Alvarez, G.M. Toffolo, B. di Camillo, A. Califano, G.A. Stolovitzky
Proceedings of the National Academy of Sciences 109(7), 2672-2677, 2012

Slowing and controlling the translocation of DNA in a solid-state nanopore
B. Luan, G Stolovitzky, G Martyna
Nanoscale 4(4), 1068-1077, The Royal Society of Chemistry, 2012

Predictive Analytics for Semi-Structured Case Oriented Processes
F.P. Curbera, S. Duan, P. Keyser, R. Khalaf, G.T. Lakshmanan
US Patent 20,120,066,166

AUTOMATIC DETECTION OF DIFFERENT TYPES OF CHANGES IN A BUSINESS PROCESS
S. Duan, P.T. Keyser, G.T. Lakshmanan, D. Shamsi
US Patent 20,120,259,792

An engine for compliance checking of clinical guidelines.
J. Mei, H. Liu, G. Xie, GT Lakshmanan
Studies in health technology and informatics180, 416, 2012

Automated correlation discovery for semi-structured processes
G.T. Lakshmanan, S. Rozsnyai, A. Slominski
US Patent 20,120,259,865

Automatic Extraction of Coronary Artery Tree in 2D X-ray Angiography
Tanveer Syeda-Mahmood, Ritwik Kumar, David Beymer, Yong Zhang, Fei Wang, Robert Lundstrom, Edward J McNulty, Joe Terdiman, others
IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis, 2012

Trainable Convolution Filters and Their Application to Face Recognition
R. Kumar, A. Banerjee, B.C. Vemuri, H. Pfister
Pattern Analysis and Machine Intelligence, IEEE Transactions on 34(7), 1423--1436, IEEE, 2012

Visualizing Risk
D. Gresh, L.A. Deleris, L. Gasparini, D. Evans
Technical Report, 2012

Segmentation of left ventricles from echocardiographic sequences via sparse appearance representation
Xiaojie Huang, Ben A Lin, Colin B Compas, Albert J Sinusas, Lawrence H Staib, James S Duncan
Mathematical Methods in Biomedical Image Analysis (MMBIA), 2012 IEEE Workshop on, pp. 305--312

A combined shape tracking and speckle tracking approach for 4D deformation analysis in echocardiography
Colin B Compas, Emily Y Wong, Xiaojie Huang, Smita Sampath, Ben A Lin, Xenophon Papademetris, Karl Thiele, Donald P Dione, Albert J Sinusas, Mathew O'Donnell, others
Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, pp. 458--461

Linking human brain local activity fluctuations to structural and functional network architectures
Alexis T Baria, PhD; Ali Mansour, MD; Lejian Huang, PhD; Marwan N Baliki, PhD; Guillermo A Cecchi, PhD; Marsel M Mesulam, MD;
Neuroimage(in press), 2012

Question analysis: How Watson reads a clue
A. Lally, J. M. Prager, M. C. McCord, B. K. Boguraev, S. Patwardhan, J. Fan, P. Fodor, J. Chu-Carroll
IBM Journal of Research and Development 56(3.4), 2--1, IBM, 2012

Structured Data and Inference in DeepQA
A. Kalyanpur, B. Boguraev, S. Patwardhan, J.W. Murdock, A. Lally, C. Welty, J. Prager, B. Coppola, A. Fokoue
IBM Journal of Research and Development 56(3/4), 10:1 - 10:14, IBM, 2012

Simulation, learning, and optimization techniques in Watson's game strategies
G. Tesauro, DC Gondek, J. Lenchner, J. Fan, JM Prager
IBM Journal of Research and Development 56(3.4), 16--1, IBM, 2012

Occupation inference through detection and classification of biographical activities
E. Filatova, J. Prager
Data \& Knowledge Engineering, Elsevier, 2012

Special Questions and Techniques
J. Prager, E. Brown, J. Chu-Carroll
IBM Journal of Research and Development 56(3-4), 11--1, IBM, 2012


Recommendations to boost content spread in social networks
Vineet Chaoji, Sayan Ranu, Rajeev Rastogi, Rushi Bhatt
WWW, 2012


Predicting diagnosis of a patient
Dorit Baras, Ariel Farkash, Edward Vitkin
US Patent App. 13/351,243

A model-driven approach to clinical practice guidelines representation and evaluation using standards.
Ariel Farkash, JT Timm, Zeev Waks
Studies in health technology and informatics192, 200--204, 2012

Managing network data
Ron Ben-Natan, Tamar Domany, Ariel Farkash, Igor Gokhman, Abigail Goldsteen, Yuval Hager, Ksenya Kveler, Boris Rozenberg, Ury Segal
US Patent US8898796 B2

Session CVE--1: Cardiovascular Elasticity--I
Emily Y Wong, Colin B Compas, Ben A Lin, Albert J Sinusas, James S Duncan, Matthew O’Donnell
International Tissue Elasticity Conference, 60, 2012

A Dynamical Appearance Model Based on Multiscale Sparse Representation: Segmentation of the Left Ventricle from 4D Echocardiography
Xiaojie Huang, Donald Dione, Colin Compas, Xenophon Papademetris, Ben Lin, Albert Sinusas, James Duncan
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2012, 58--65, Springer Berlin/Heidelberg

Complex local phase based subjective surfaces (CLAPSS) and its application to DIC red blood cell image segmentation
Taoyi Chen, Yong Zhang, Changhong Wang, Zhenshen Qu, Fei Wang, Tanveer Syeda-Mahmood
Neurocomputing, Elsevier, 2012

Finding Similar 2D X-Ray Coronary Angiograms
Tanveer Syeda-Mahmood, Fei Wang, R Kumar, D Beymer, Y Zhang, Robert Lundstrom, Edward McNulty
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2012, pp. 501--508, Springer Berlin Heidelberg

SHAPE BASED SIMILARITY OF CONTINUOUS WAVE DOPPLER IMAGES
Tanveer Fathima Syeda-mahmood, David James Beymer
US Patent 20,120,250,957

Proceedings of the Third MICCAI international conference on Medical Content-Based Retrieval for Clinical Decision Support
Hayit Greenspan, Henning M\"uller, Tanveer Syeda-Mahmood
Springer-Verlag, 2012

DNA-translocation through a solid-state nanopore coated with a functionally switchable self-assembled monolayer
S. Harrer, D. Wang, B. Luan, G. A. Stolovitzky, H. Peng, A. Afzali-Ardakani
Proc. 222nd ECS PRiME Conference 2012

Self-service financial control and organizational governance in cloud
Chunqiang Tang, Chang-shing Perng, Salman A Baset
Network and Service Management (CNSM), 2012 8th International Conference on, pp. 229--232

Exact Haplotype Reconstruction Of F2 Populations
N Haiminen, L Parida, F Utro
US Patent Application 13/529,476

Precise Simulation Of A Progeny Derived From Recombining Parents
N Haiminen, L Parida, F Utro
US Patent App. 13/675,496

Finding the most likely answer to a natural language question
E.W. Brown, A.R. Coden, J.M. Prager, D.R. Radev, V. Samn
Patent US08340955

Analyzing the" CareGap": Assessing Gaps in Adherence to Clinical Guidelines in Adult Soft Tissue Sarcoma.
Zeev Waks, Esther Goldbraich, Ariel Farkash, Michele Torresani, Rossella Bertulli, Nicola Restifo, Paolo Locatelli, Paolo Casali, Boaz Carmeli, others
Studies in health technology and informatics186, 46--50, 2012

Method and apparatus for maintaining and processing provenance data in data stream processing system
Marion Lee Blount, Sidney Davis II John, Maria Rene Ebling, Archan Misra, Daby Mousse Sow, Min Wang
US Patent 8,301,626

On Sensor Bias in Experimental Methods for Comparing Interest-Point, Saliency, and Recognition Algorithms
Alexander Andreopoulos, John K. Tsotsos
Pattern Analysis and Machine Intelligence, IEEE Transactions on 34(1), 110--126, IEEE, 2012

Power Management of Multi-Core Chips: Challenges and Pitfalls
Pradip Bose, Alper Buyuktosunoglu, John A. Darringer, Meeta S. Gupta, Michael B. Healy, Hans Jacobson, Indira Nair, Jude A. Rivers, Jeonghee Shin, Augusto Vega, Alan J. Weger
Design, Automation & Test in Europe Conference & Exhibition, pp. 977--982, 2012

Thermal imaging and power mapping at IBM
Alan J Weger, Jamil Wakil, Hendrik F Hamann
Thermal and Thermomechanical Phenomena in Electronic Systems (ITherm), 2012 13th IEEE Intersociety Conference on, pp. 1425--1431

Development of a flexible chip infrared (IR) thermal imaging system for product qualification
Chenzhou Lian, Marc Knox, Kamal Sikka, Xiaojin Wei, Alan J Weger
Semiconductor Thermal Measurement and Management Symposium (SEMI-THERM), 2012 28th Annual IEEE, pp. 337--343

Near-Infrared Photon Emission Spectroscopy Trends in Scaled SOI Technologies
Ulrike Kindereit, Alan J Weger, Franco Stellari, Peilin Song, Herv\'e Deslandes, Ted Lundquist, Prasad Sabbineni
Istfa 2012: Conference Proceedings from the 38th International Symposium for Testing and Failure Analysis, pp. 128

Near-infrared Photon Emission Spectroscopy of a 45 nm SOI Ring Oscillator
U. Kidereit, A.J. Weger, F. Stellari, P. Song, H. Deslandes, T. Lundquist, and P. Sabbineni
Proc. of International Symposium on Physics and Reliability (IRPS), pp. 2D.2.1 - 2D.2.7 , 2012

Modeling disease progression via fused sparse group lasso
Jiayu Zhou, Jun Liu, Vaibhav A Narayan, Jieping Ye
Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 1095--1103, 2012

US 7249058: Method of promoting strategic documents by bias ranking of search results
Kim; Moon Ju, Rodriguez; Juan-Leon, Doganata; Yurdaer Nezihi, Drissi; Youssef, Kozakov; Lev

US 8117611 B2: Method, system, and program product for deploying a platform dependent application in a grid environment
Yurdaer N. Doganata, Genady Y. Grabarnik, Moon J. Kim, Galina Kofman, Lev Kozakov, Dikran Meliksetian, Larisa Shwartz

US 8209204 B2: Influencing behavior of enterprise operations during process enactment using provenance data
Sharon C. Adler, Francisco Phelan Curbera, Yurdaer Nezihi Doganata, Chung-Sheng Li, Axel Martens, Kevin Patrick McAuliffe, Huong Thu Morris, Nirmal K. Mukhi, Aleksander A. Slominski

US 8224857 B2: Techniques for personalized and adaptive search services
Yurdaer Nezihi Doganata, Youssef Drissi, Lev Kozakov

US 8229775 B2: Processing of provenance data for automatic discovery of enterprise process information
Sharon C. Adler, Francisco Phelan Curbera, Yurdaer Nezihi Doganata, Chung-Sheng Li, Axel Martens, Kevin Patrick McAuliffe, Huong Thu Morris, Nirmal K. Mukhi, Aleksander A. Slominski

Tumor microRNA-29a expression and the risk of recurrence in stage II colon cancer
Ofer Purim, Alina Weismann-Brenner, Michal Kushnir, Gila Lithwick-Yanai, Ranit T Aharonov, Hadas Gibori, Yulia Kundel, Sara Morgenstern, Marisa Halpern, Yaron Niv, others
JOURNAL OF CLINICAL ONCOLOGY, pp. 2097, Spandidos Publications, 2012

Classification of the four main types of lung cancer using a microRNA-based diagnostic assay
Shlomit Gilad, Gila Lithwick-Yanai, Iris Barshack, Sima Benjamin, Irit Krivitsky, Tina Bocker Edmonston, Marluce Bibbo, Craig Thurm, Laurie Horowitz, Yajue Huang, others
The Journal of Molecular Diagnostics 14(5), 510--517, Elsevier, 2012

Global microRNA profiling in favorable prognosis subgroups of cancer of unknown primary (CUP) demonstrates no significant expression differences with metastases of matched known primary tumors
George Pentheroudakis, Yael Spector, Dimitrios Krikelis, Vassiliki Kotoula, Eti Meiri, Vassiliki Malamou-Mitsi, George Fountzilas, Mats Sanden, Nicholas Pavlidis, Hila Benjamin, others
Clinical \& experimental metastasis, 1--9, Springer, 2012

Further validation of a MicroRNA-based assay for differential diagnosis of mesothelioma
M Sanden, M Ben-David, K Ashkenazi, S Tabak, E Klinke, O Zion, M Ezagouri, H Pass, R Aharonov
HISTOPATHOLOGY, pp. 165--165, 2012

New microRNA-based diagnostic test for lung cancer classification
Ranit Aharonov, Gila Lithwick Yanai, Hila Benjamin, Mats Olot Sanden, Marluce Bibbo, Craig Thurm, Laurie Horowitz, Yajue Huang, Meora Feinmesser, Iris Barshack, others
JOURNAL OF CLINICAL ONCOLOGY, pp. 489A--490A, 2012


Optimal Estimation of L1-Regularization Prior from a Regularized Empirical Bayesian Risk Standpoint
Hui Huang, Eldad Haber, Lior Horesh
Inverse Problems and Imaging 6(3), 447--464, 2012

Automatically Updating Meeting Information
Lior Horesh, Dimitri Kanevsky, David Nahamoo, Tara N Sainath
US Patent 20,120,243,670

Weakly Supervised Topic Grouping of YouTube Search Results
Liujuan Cao, Rongrong Ji, Wei Liu, Yue Gao, Ling-Yu Duan, and Chaoguang Men
IEEE International Conference on Image Processing (ICIP), IEEE, 2012

Optimal Semi-Supervised Metric Learning for Image Retrieva
Kun Zhao, Wei Liu, and Jianzhuang Liu
ACM International Conference on Multimedia (ACM MM), ACM, 2012
PIC top-quality conference (Multimedia)

Trajectory-Based Modeling of Human Actions with Motion Reference Points
Yu-Gang Jiang, Qi Dai, Xiangyang Xue, Wei Liu, and Chong-Wah Ngo
European Conference on Computer Vision (ECCV), Springer, 2012
PIC top-quality conference (Multimedia, User Interface Technologies)

Supervised Hashing with Kernels
Wei Liu, Jun Wang, Rongrong Ji, Yu-Gang Jiang, and Shih-Fu Chang
IEEE Conference on Computer Vision and Pattern Recognition (CVPR), IEEE, 2012
PIC top-quality conference (Multimedia, User Interface Technologies)

Compact Hyperplane Hashing with Bilinear Functions
Wei Liu, Jun Wang, Yadong Mu, Sanjiv Kumar, and Shih-Fu Chang
International Conference on Machine Learning (ICML), ACM, 2012
PIC top-quality conference (AI, Knowledge Discovery & Data Mining)

Task-Dependent Visual-Codebook Compression
Rongrong Ji, Hongxun Yao, Wei Liu, Xiaoshuai Sun, and Qi Tian
IEEE Transactions on Image Processing 21(4), 2282-2293, IEEE, 2012
PIC top-quality journal (Multimedia)

Method and apparatus for matching of bracketed patterns in test strings
T. Huynh, S. Polonsky, and I. Rigoutsos
Patent US8189931B2

Nanofludic field effect transistor based on surface charge modulated nanochannel
H. Peng, S. Polonsky, S. Rossnagel, G.A. Stolovitzky
Patent US8110410B2
US Patent App. 13/365,577

Integrating Querying and Browsing in Partial Graph Visualizations
Adam Perer, Frank van Ham
Technical Report, IBM Technical Report 12-01, 2012

Diversity among enterprise online communities: collaborating, teaming, and innovating through social media
Michael Muller, Kate Ehrlich, Tara Matthews, Adam Perer, Inbal Ronen, Ido Guy
Proceedings of the 2012 ACM annual conference on Human Factors in Computing Systems, pp. 2815--2824

SaNDVis: visual social network analytics for the enterprise
Adam Perer, Ido Guy
Proceedings of the ACM 2012 conference on Computer Supported Cooperative Work Companion, pp. 275--276

Interactive Visual Patient Cohort Analysis
Zhiyuan Zhang, David Gotz, Adam Perer
IEEE VAHC Workshop, 2012

The Longitudinal Use of SaNDVis: Visual Social Network Analytics in the Enterprise
Adam Perer, Ido Guy, Erel Uziel, Inbal Ronen, Michal Jacovi
IEEE, 2012

Proceedings of the Workshop''Beyond Time and Errors--Novel Evaluation Methods for Visualization''(BELIV 2012, October 14--15, 2012, Seattle, USA)
Enrico Bertini, Adam Perer, Heidi Lam, Petra Isenberg, Tobias Isenberg, others
2012

Overview of the Second Workshop on Medical Content--Based Retrieval for Clinical Decision Support
Adrien Depeursinge, Hayit Greenspan, Tanveer Syeda, Henning M\"uller
Medical Content-Based Retrieval for Clinical Decision Support, pp. 1--11, Springer, 2012

Vessel Identification Using Shape and Motion Mapping for Coronary Angiogram Sequences
David J Beymer, Hayit Greenspan, Tanveer Syeda-Mahmood, Fei Wang, Yong Zhang
US Patent App. 13/593,004

Extraction of information from clinical reports
Tanveer F Syeda-Mahmood, Laura Chiticariu
US Patent App. 13/408,906

Usage of assigned treatment in clinical decision support systems
Boaz Carmeli, Carmel Kent, Yonatan Maman, Ruty Rinott, Yoav Rubin, Noam Slonim
US Patent App. 13/400,071

Framework for evidence based case structuring
Boaz Carmeli, Carmel Kent, Yonatan Maman, Ruth Rinott, Yoav Rubin, Noam Slonim
US Patent App. 13/366,325

Textual and formatted data presentation
Boaz Carmeli, Carmel Kent, Yonatan Maman, Ruty Rinott, Yoav Rubin, Noam Slonim
US Patent App. 13/400,074


Conveying context-sensitive information for a conversation
Ankur Gandhe, Nandakishore Kambhatla, Amit Kumar Singh, Karthik Visweswariah
US Patent App. 13/460,348

Employee Engagement: Conceptual Model and Computation Framework
Mayuri Duggirala, Sameep Mehta, Nanda Kambhatla, Pooja Arya
SRII Global Conference (SRII), 2012 Annual, pp. 850--858

An engine for clinician guideline compliance checking
Jing Mei, Haifeng Liu, Guotong Xie, Geetika Lakshmanan.
Proceedings of the 24th European Federation for Medical Informatics (MIE 2012)

Towards Collaborative Chronic Care Using a Clinical Guideline-Based Decision Support System
Haifeng Liu, Jing Mei, Guotong Xie.
Proceedings of the 24th European Federation for Medical Informatics (MIE 2012)

Intrapersonal retrospective recommendation: lifestyle change recommendations using stable patterns of personal behavior
Robert G Farrell, Catalina M Danis, Sreeram Ramakrishnan, Wendy A Kellogg
Proceedings of the First International Workshop on Recommendation Technologies for Lifestyle Change (LIFESTYLE 2012), Dublin, Ireland, pp. 24

Social Engagement Paradigms: Crowd Shifting, Nudges and other Forms of Behavioral Persuasion
Wendy A. Kellogg, Thomas Erickson, Catalina Danis, Robert Farrell
Human Computer Interaction Consortium (HCIC), 2012

Assessing Disclosure Risk and Data Utility Trade-off in Transaction Data Anonymization.
Grigorios Loukides, Aris Gkoulalas-Divanis, Jianhua Shao
Int. J. Software and Informatics 6(3), 399--417, 2012

From label fusion to correspondence fusion: a new approach to unbiased groupwise registration
Paul A Yushkevich, Hongzhi Wang, John Pluta, Brian B Avants
Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on, pp. 956--963

Dependency prior for multi-atlas label fusion
Hongzhi Wang, Paul A Yushkevich
Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, pp. 892--895

Guiding automatic segmentation with multiple manual segmentations
Hongzhi Wang, Paul A Yushkevich
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2012, pp. 429--436, Springer

Robust automated amygdala segmentation via multi-atlas diffeomorphic registration
Jamie L Hanson, Jung W Suh, Brendon M Nacewicz, Matthew J Sutterer, Amelia A Cayo, Diane E Stodola, Cory A Burghy, Hongzhi Wang, Brian B Avants, Paul A Yushkevich, others
Frontiers in neuroscience6, Frontiers Media SA, 2012

VERIFICATION OF COMPLEX WORKFLOWS THROUGH INTERNAL ASSESSMENT OR COMMUNITY BASED ASSESSMENT
Stolovitzky, Gustavo A. Rice, John J. Meyer Rojas, Pablo Norel, Raquel Royyuru, Ajay K. Sprengel, Joerg Corthesy, Stephanie
US Patent App. 13/426,104

Determining the status of virtual storage in the first memory within the first operating system and reserving resources for use by augmenting operating system
Michel Henri Th\'eodore Hack, Stephen John Heisig, Joshua Wilson Knight III, Gong Su
US Patent 8,336,055

Hierarchal control of teleconferences
Patrick J O'sullivan, Edith H Stern, Robert C Weir, Barry E Willner, Marjorie R Willner
US Patent 8,275,108

Managing urgency indicators in electronic messaging
Patrick J O'sullivan, Edith H Stern, Robert C Weir, Barry E Willner
US Patent 8,285,795

Data consistency in long-running processes
Patrick J O'sullivan, Gregory Sechuga, Edith H Stern, Barry E Willner
US Patent 8,171,348

Managing electric power consumption by configuring elements of a distributed computing system
Edward P Clarke Jr, Lorraine M Herger, Marcel-Catalin Rosu, Frank A Schaffa, Edith H Stern
US Patent 8,321,704

Inhibition of telephony based phishing
Patrick J O'sullivan, Edith H Stern, Robert C Weir, Barry E Willner
US Patent 8,300,791

Method and system for call to role
Maria Rene Ebling, William Francis Jerome, Barry Leiba, Edith Helen Stern
US Patent App. 13/587,118

Resource configuration change management
Edith H Stern, Randy George, Glen D Tindal
US Patent App. 13/460,848




Anomaly detection using usage data for metering system
Arun Hampapur, Zhong Bo Jiang, Hongfei Li, Shilpa N Mahatma
US Patent App. 13/446,701

Fast source independent estimation of lithographic difficulty supporting large scale source optimization
David DeMaris, Maria Gabrani, Sankha S Sarkar, Nathalie Casati, Ronald Luijten, Kafai Lai, Kehan Tian
in Optical Microlithography XXV, Will Conley (Ed.), Proceedings of SPIE, pp. 832614, 2012

Automatic wafer data sample planning and review
Nathalie Casati, David DeMaris, Maria Gabrani, Ronald P Luijten
US Patent App. 13/663,816

Innovation trajectories for information visualizations: Comparing treemaps, cone trees, and hyperbolic trees
Ben Shneiderman, Cody Dunne, Puneet Sharma, Ping Wang
Information Visualization 11(2), 87--105, SAGE Publications, 2012

Rapid understanding of scientific paper collections: Integrating statistics, text analytics, and visualization
Cody Dunne, Ben Shneiderman, Robert Gove, Judith Klavans, Bonnie Dorr
Journal of the American Society for Information Science and Technology 63(12), 2351--2369, Wiley Online Library, 2012

GraphTrail: Analyzing large multivariate, heterogeneous networks while supporting exploration history
Cody Dunne, Nathalie Henry Riche, Bongshin Lee, Ronald Metoyer, George Robertson
Proceedings of the SIGCHI conference on human factors in computing systems, pp. 1663--1672, 2012

Charting collections of connections in social media: creating visualizations with NodeXL
Cody Dunne
Proceedings of the 13th Annual International Conference on Digital Government Research, pp. 300--301, 2012

CrackTree: Automatic crack detection from pavement images
Qin Zou, Yu Cao, Qingquan Li, Qingzhou Mao, Song Wang
Pattern Recognition Letters 33(3), 227--238, Elsevier, 2012

Grain segmentation of 3D superalloy images using multichannel EWCVT under human annotation constraints
Yu Cao, Lili Ju, Song Wang
Computer Vision--ECCV 2012, pp. 244--257, Springer

Superedge grouping for object localization by combining appearance and shape information
Zhiqi Zhang, Sanja Fidler, Jarrell Waggoner, Yu Cao, Sven Dickinson, Jeffrey Mark Siskind, Song Wang
Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on, pp. 3266--3273

Linking Data Elements Based on Similarity Data Values and Semantic Annotations
Mihaela Ancuta Bornea, Songyun Duan, Achille Belly Fokoue-Nkoutche, Oktie Hassanzadeh, Anastasios Kementsietsidis, Kavitha Srinivas, Michael J Ward
US Patent App. 13/491,724

Association of heart rate with blood pressure variability: implications for blood pressure measurement
Amos Cahan, Iddo Z Ben-Dov, Michael Bursztyn
American journal of hypertension 25(3), 313--318, Oxford University Press, 2012

Multiparametric MRI maps for detection and grading of dominant prostate tumors
Mehdi Moradi, Septimiu E Salcudean, Silvia D Chang, Edward C Jones, Nicholas Buchan, Rowan G Casey, S Larry Goldenberg, Piotr Kozlowski
Journal of Magnetic Resonance Imaging 35(6), 1403--1413, Wiley Online Library, 2012

Fusion of ultrasound B-mode and vibro-elastography images for automatic 3-D segmentation of the prostate
Seyedeh Sara Mahdavi, Mehdi Moradi, William J Morris, S Larry Goldenberg, Septimiu E Salcudean
Medical Imaging, IEEE Transactions on 31(11), 2073--2082, IEEE, 2012

Seed localization in ultrasound and registration to C-arm fluoroscopy using matched needle tracks for prostate brachytherapy
Mehdi Moradi, Seyedeh Sara Mahdavi, Ehsan Dehghan, Julio R Lobo, Sanchit Deshmukh, William James Morris, Gabor Fichtinger, Septimiu E Salcudean
Biomedical Engineering, IEEE Transactions on 59(9), 2558--2567, IEEE, 2012

Two solutions for registration of ultrasound to MRI for image-guided prostate interventions
Mehdi Moradi, Firdaus Janoos, Andriy Fedorov, Petter Risholm, Tina Kapur, Luciant D Wolfsberger, Paul L Nguyen, Clare M Tempany, William M Wells
Engineering in Medicine and Biology Society (EMBC), 2012 Annual International Conference of the IEEE, pp. 1129--1132


Use of Needle Track Detection to Quantify the Displacement of Stranded Seeds Following Prostate Brachytherapy
Julio R Lobo, Mehdi Moradi, Nick Chng, Ehsan Dehghan, William J Morris, Gabor Fichtinger, Septimiu E Salcudean
Medical Imaging, IEEE Transactions on 31(3), 738--748, IEEE, 2012

MRI Confirmed Prostate Tissue Classification with Laplacian Eigenmaps of Ultrasound RF Spectra
Mehdi Moradi, Christian Wachinger, Andriy Fedorov, William M Wells, Tina Kapur, Luciant D Wolfsberger, Paul Nguyen, Clare M Tempany
Machine Learning in Medical Imaging, pp. 19--26, Springer, 2012

Uncertainty visualization in HARDI based on ensembles of ODFs
Fangxiang Jiao, Jeff M Phillips, Yaniv Gur, Chris R Johnson
Pacific Visualization Symposium (PacificVis), 2012 IEEE, pp. 193--200

White matter structure assessment from reduced HARDI data using low-rank polynomial approximations
Yaniv Gur, Fangxiang Jiao, Stella Xinghua Zhu, Chris R Johnson
Medical image computing and computer-assisted intervention: MICCAI... International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 186, 2012

Extracting risk modeling information from medical articles.
L\'ea Amandine Deleris, Bogdan Sacaleanu, Lamia Tounsi
Studies in health technology and informatics192, 1158--1158, 2012

Measuring longitudinal change in the hippocampal formation from in vivo high-resolution T2-weighted MRI
Sandhitsu R Das, Brian B Avants, John Pluta, Hongzhi Wang, Jung W Suh, Michael W Weiner, Susanne G Mueller, Paul A Yushkevich
Neuroimage 60(2), 1266--1279, Elsevier, 2012

Reconstruction of the human hippocampus in 3D from histology and high-resolution ex-vivo MRI
Daniel H Adler, Alex Yang Liu, John Pluta, Salmon Kadivar, Sylvia Orozco, Hongzhi Wang, James C Gee, Brian B Avants, Paul A Yushkevich
Biomedical Imaging (ISBI), 2012 9th IEEE International Symposium on, pp. 294--297

Fully automatic segmentation of the open mitral leaflets in 3D transesophageal echocardiographic images using multi-atlas label fusion and deformable medial modeling
Alison M Pouch, Hongzhi Wang, Paul A Yushkevich, Manabu Takabe, Benjamin M Jackson, Joseph H Gorman, Robert C Gorman, Chandra M Sehgal
Ultrasonics Symposium (IUS), 2012 IEEE International, pp. 220--223

Brain parcellation aids in electrode localization in epileptic patients
Jue Wu, Kathryn Davis, Allan Azarion, Yuanjie Zheng, Hongzhi Wang, Brian Litt, James Gee
Augmented Environments for Computer-Assisted Interventions, pp. 130--137, Springer, 2012

Estimating BOLD Signals of Deep Brain Networks From EEG using Canonical correlation Analysis
Tal El Hay, Sivan Kinreich, Noam Slonim, Ilana Podlipsky, Talma Hendler, Lavi Shpigelman
Organisation for Human Brain Mapping, 2012

Temporal classification of medical events
Preethi Raghavan, Eric Fosler-Lussier, Albert M Lai
Proceedings of the 2012 Workshop on Biomedical Natural Language Processing, pp. 29--37

Learning to temporally order medical events in clinical text
Preethi Raghavan, Eric Fosler-Lussier, Albert M Lai
Proceedings of the 50th Annual Meeting of the Association for Computational Linguistics: Short Papers-Volume 2, pp. 70--74, 2012

Medical event coreference resolution using the UMLS metathesaurus and temporal reasoning
Preethi Raghavan, Eric Fosler-Lussier, Chris Brew, Albert M Lai
Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium, pp. 465--472, 2012

Exploring semi-supervised coreference resolution of medical concepts using semantic and temporal features
Preethi Raghavan, Eric Fosler-Lussier, Albert M Lai
Proceedings of the 2012 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, pp. 731--741


History-Alignment Models for Bias-Aware Prediction of Virological Response to HIV Combination Therapy
Jasmina Bogojeska, Daniel St\"ockel, Maurizio Zazzi, Kaiser Rolf, Incardona Francesca, Rosen-Zvi Michal, Thomas Lengauer
Proceedings of the 15th International Conference on Artificial Intelligence and Statistics (AISTATS), pp. 118--126, 2012

Method and Apparatus for a Visualized Health Dashboard Based on Personalized Appearance Prediction
P. Hsueh, M. Hsiao, C. Lan, H. Chang

Method and Apparatus for Personalized Adherence Feedback via Model-driven Sensor Data Assessment
M. Hsiao, P. Hsueh

Visualization for health education to facilitate planning for intervention adaptation and adherence
P. Hsueh, M. Hsiao, V. Deng, S. Lee, S. Ramakrishnan

Privacy Protection for Personal Data Integration and Sharing in Care Coordination Services: A Case Study on Wellness Cloud
Hsueh, P., T. Grandison, L. Zeng, X. Zhu, H. Pai, C. Lan, R. Hsiao, and H. Chang
Proceedings of International Conference of Service Operations, Logistics and Informatics (SOLI 2012)

An adaptive method of tracking anatomical curves in X-ray sequences
Yu Cao, Peng Wang
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2012, pp. 173--180, Springer

An enhanced XCS rule discovery module using feature ranking
M Abedini, M Kirley
International Journal of Machine Learning and Cybernetics, 1--15, Springer, 2012

FS-XCS vs. GRD-XCS: An analysis using high-dimensional DNA microarray gene expression data sets
Mani Abedini, Michael Kirley, Raymond Chiong
The Second Australian Workshop on Artificial Intelligence in Health AIH 2012, pp. 21

De-identification in visual media data
Tanveer F Syeda-Mahmood, David J Beymer, Omar UF Choque, Dulce B Ponceleon, SHI Dai
US Patent App. 13/351,141

Industrial methodology for process verification in research (IMPROVER): toward systems biology verification
P. Meyer, J. Hoeng, J. J. Rice, R. Norel, J. Sprengel, K. Stolle, T. Bonk, S. Corthesy, A. Royyuru, M. C. Peitsch, G. Stolovitzky
Bioinformatics 28(9), 1193--1201, 2012

Prediction of low energy protein side chain configurations using Markov random fields
Chen Yanover, Menachem Fromer
Bayesian Methods in Structural Bioinformatics, Springer-Verlag, 2012


SOR: Scalable Orthogonal Regression for Non-Redundant Feature Selection and its Healthcare Applications
D. Luo, F. Wang, J. Sun, M. Markatou, J. Hu, S. Ebadollahi
SIAM Data Mining Conference, 2012


Knowledge-analytics synergy in clinical decision support.
N. Slonim, B. Carmeli, A. Goldsteen, O. Keller, C. Kent, R. Rinott
Studies in health technology and informatics180, 703, 2012

Utilizing assigned treatments as labels for supervised machine learning in clinical decision support
Ruty Rinott, Boaz Carmeli, Carmel Kent, Yonatan Maman, Yoav Rubin, Noam Slonim
Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium, pp. 493--502, 2012

Towards heterogeneous temporal clinical event pattern discovery: a convolutional approach
F. Wang, N. Lee, J. Hu, J. Sun, S. Ebadollahi
Proceedings of the 18th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 453--461, 2012

SYSTEMS AND METHODS FOR AUTOMATED EXTRACTION OF MEASUREMENT INFORMATION IN MEDICAL VIDEOS
Arnon Amir, David James Beymer, Karen W Brannon, Sangeeta T Doraiswamy, Tanveer Fathima Syeda-mahmood
US Patent 20,120,321,189

From Clinical Requirement to Personalized Wellness Decision Support: A Data-driven Framework for Computer-Supported Guideline Refinement
Pei-Yun Hsueh, , Ci-Wei Lan, Vincent Deng, and Xinxin Zhu
Proceedings of the 24th European Medical Informatics Conference (MIE 2012), 2012

Efficacy of Antiretroviral Therapy Switch in HIV-Infected Patients: A 10-Year Analysis of the EuResist Cohort
M Oette, E Schulter, M Rosen-Zvi, Y Peres, M Zazzi, A Sonnerborg, D Struck, A Altmann, R Kaiser
Intervirology 55(2), 160--166, Karger Publishers, 2012

Publishing Bibliographic Data on the Semantic Web using BibBase
Reynold S. Xin, Oktie Hassanzadeh, Christian Fritz, Shirin Sohrabi and Renee J. Miller
Semantic Web, IOS Press, 2012

Semantic Link Discovery over Relational Data
Oktie Hassanzadeh, Anastasios Kementsietsidis, Lipyeow Lim, Renee J. Miller, and Min Wang
Semantic Search over the Web, pp. 193-224, Springer, 2012

Challenges and Requirements on Privacy in Enabling Evidence Use Service on Wellness Cloud
P. Hsueh, T. Grandison, X. Zhu, H. Pai, and H. Chang
Frontiers in Service Conference, 2012

Discovering Patterns in Gene Order
Laxmi Parida, Niina Haiminen
Evolutionary Genomics, in Methods in Molecular Biology 855(3), 431-455, Springer, 2012
Abstract

Information-based sequential selection of clinical tests in risk assessment
N. Parush, T. El-Hay, M. Ozery-Flato, L. Ryliskyte, Z. Visockiene, A. Laucevicius
Stud Health Technol Inform180, 781--785, 2012

GenomicTools: a computational platform for developing high-throughput analytics in genomics
Aristotelis Tsirigos, Niina Haiminen, Erhan Bilal, Filippo Utro
Bioinformatics 28(2), 282-283, 2012
Abstract



GenomicTools: a computational platform for developing high-throughput analytics in genomics
A. Tsirigos, N. Haiminen, E. Bilal, F. Utro
Bioinformatics 28(2), 282--283, Oxford University Press, 2012
Abstract

Utilizing Assigned Treatments as Labels for Supervised Machine Learning in Clinical Decision Support
R Rinott, B Carmeli, C Kent, Y Maman, Y Rubin, and N Slonim
Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium (IHI 2012), pp. 493-502, ACM

Risk Mediation Service Cloud: Constructing Statistical Models of User Compliance for Sustainable Chronic Care
P. Hsueh, S. Ramakrishnan and H. Chang
Global Conference of Service Research and Innovation: Driving Innovation for IT Services, 2012

Towards Personalized Care Coordination Service: Integrating Guideline-based Practice with Interactive Data-driven Analytics
P. Hsueh and S. Ramakrishnan
Global Conference of Service Research and Innovation: Driving Innovation for IT Services, 2012

Predicting Response to Antiretroviral Treatment by Machine Learning: The EuResist Project
Maurizio Zazzi, Francesca Incardona, Michal Rosen-Zvi, Mattia Prosperi, Thomas Lengauer, Andre Altmann, Anders Sonnerborg, Tamar Lavee, Eugen Schulter, Rolf Kaiser
Intervirology55, 123-127 , 2012


2011

Location-Aware Nutrition Management
Chang, Hung-Yang and Hsiao, Mark and Hsueh, Pei-Yun S and Liu, Leslie S and Zeng, Liangzhao
US Patent App. 13/007,186
Abstract

Topographical distribution of oxygen partial pressure in the upright human lungs
Swan, Annalisa J and Clark, Alys R and Burrowes, Kelly S and Tawhai, Merryn H
B68. PULMONARY VENTILATION DYNAMICS: NOVEL MODELS, IMAGES AND THEORIES, pp. A3583--A3583, American Thoracic Society, 2011
Abstract

Segmentation of liver, its vessels and lesions from CT images for surgical planning
D\'ario AB Oliveira, Raul Q Feitosa, Mauro M Correia
Biomedical engineering online 10(1), 30, BioMed Central, 2011

Unsupervised Integration of Multiple Protein Disorder Predictors: The Method and Evaluation on CASP7, CASP8 and CASP9 Data
Ping Zhang, Zoran Obradovic
Proteome Science9, 2011
Abstract

Learning from Inconsistent and Unreliable Annotators by a Gaussian Mixture Model and Bayesian Information Criteria
Ping Zhang, Zoran Obradovic
European Conference on Machine Learning and Principles and Practice of Knowledge Discovery in Databases (ECML PKDD), 2011
Abstract


Auto-Grouping Emails For Faster E-Discovery
Sachindra Joshi, Danish Contractor, Kenney Ng, Prasad M. Deshpande, Thomas Hampp
PVLDB 4(12), 1284--1294, 2011

Using Pharmacogenetics Knowledge to Increase Accuracy of Alerts for Adverse Drug Events
Yossi Mesika, Byung-Chul Lee, Yengenia Tsimerman, Haggai Roitman, Heon-Kyu Park
23rd International Conference of the European Federation for Medical Informatics (MIE), [Medical Informatics], 2011

Prognostic Data-Driven Clinical Decision Support - Formulation and Implications
R Rinott, B Carmeli, C Kent, D Landau, Y Maman, Y Rubin, and N Slonim
23rd International Conference of the European Federation for Medical Informatics (MIE), 2011

A Unified Approach for Social-Medical Discovery
Haggai Roitman, Yossi Mesika, Yevgenia Tsimerman, Sivan Yogev
23rd International Conference of the European Federation for Medical Informatics (MIE), [Social-Medical Discovery], 2011

A standard based approach for biomedical knowledge representation
Ariel Farkash, Hani Neuvirth, Yaara Goldschmidt, Costanza Conti, Federica Rizzi, Stefano Bianchi, Erika Salvi, Daniele Cusi, Amnon Shabo
Stud. Health Technol. Inform169, 689--693, 2011

Active online classification via information maximization
N Slonim, K Crammer, and E Yom-Tov
22nd International Joint Conference on Artificial Intelligence (IJCAI), 2011

Privacy and Security Issues in Data Mining and Machine Learning: International ECML/PKDD Workshop, PSDML 2010, Barcelona, Spain, September 24, 2010. Revised Selected Papers
C. Dimitrakakis, A. Gkoulalas-Divanis, A. Mitrokotsa, V.S. Verykios, Y. Saygin
Divanis, A Mitrokotsa... - 2011 - books.google.com, Springer

Large-scale analysis of chromosomal aberrations in cancer karyotypes reveals two distinct paths to aneuploidy
M Ozery-Flato, C Linhart, L Trakhtenbrot, S Izraeli, R Shamir
Genome Biology 12(6), R61, BioMed Central Ltd, 2011

Nanopore-Based DNA Sequencing and DNA Motion Control
H Peng, B Luan, G Stolovitzky
Nanopores: Sensing and Fundamental Biological Interactions; Iqbal, Samir M. and Bashir, Rashid (Eds.) , pp. 255, Springer Verlag, 2011

Intelligent Nutrition Service for Personalized Dietary Guidelines and Lifestyle Intervention
Hsiao, R., Hsueh, P., et al.
International Joint Conference on Service Sciences, Computer Aided Service Experience Engineering Workshop. , 2011

A system and method for in-take and location aware food recommdation for diabetes
M. Hsiao, P. Hsueh, L. Zeng, L. Liu, H. Chang

An OCL-compliant GELLO Engine.
J Mei, H Liu, G Xie, S Liu, B Zhou
XXIII International Conference of the European Federation for Medical Informatics (MIE 2011), pp. 130

Sequencing of a QTL-rich Region of the Theobroma cacao Genome using Pooled BACs and the Identification of Trait Specific Candidate Genes
F A Feltus, C A Saski, K Mockaitis, N Haiminen, L Parida, Z Smith, J Ford, M E Staton, S P Ficklin, B P Blackmon, C-H Cheng, R J Schnell, D N Kuhn, J-C Motamayor
BMC Genomics 12(379), 379, BioMed Central Ltd, 2011

Assessing Pooled BAC and Whole Genome Shotgun Strategies for Assembly of Complex Genomes
Niina Haiminen, F Alex Feltus, Laxmi Parida
BMC Genomics 12(194), 194, BioMed Central Ltd, 2011


Randomization techniques for assessing the significance of gene periodicity results
A Kallio, N Vuokko, M Ojala, N Haiminen, H Mannila
BMC Bioinformatics 12(330), 330, BioMed Central Ltd, 2011

Smarter log analysis
Ehud Aharoni, Shai Fine, Yaara Goldschmidt, Ofer Lavi, Oded Margalit, Michal Rosen-Zvi, Lavi Shpigelman
IBM Journal of Research and Development 55(5)(10), 2011

Guess who?: enriching the social graph through a crowdsourcing game
Ido Guy, Adam Perer, Tal Daniel, Ohad Greenshpan, Itai Turbahn
Proceedings of the SIGCHI Conference on Human Factors in Computing Systems, pp. 1373--1382, 2011

Visual social network analytics for relationship discovery in the enterprise
Adam Perer, Ido Guy, Erel Uziel, Inbal Ronen, Michal Jacovi
Visual Analytics Science and Technology (VAST), 2011 IEEE Conference on, pp. 71--79, Runner-up for Best Paper Award

Orion: A system for modeling, transformation and visualization of multidimensional heterogeneous networks
Jeffrey Heer, Adam Perer
Visual Analytics Science and Technology (VAST), 2011 IEEE Conference on, pp. 51--60

Dynamic Storage and Retrieval of Process Graphs
F Curbera, P T Keyser, R Khalaf, G T Lakshmanan
US Patent 20,110,270,853


Dynamic component placement in an event-driven component-oriented network data processing system
G T Lakshmanan, C Dorai, R E Strom, others
US Patent 7,962,650

Automatic Group Sparse Coding
F Wang, N Lee, J Sun, J Hu, S Ebadollahi
Twenty-Fifth AAAI Conference on Artificial Intelligence, 2011

Mining electronic medical records to explore the linkage between healthcare resource utilization and disease severity in diabetic patients
N Lee, A F Laine, J Hu, F Wang, J Sun, S Ebadollahi
Healthcare Informatics, Imaging and Systems Biology (HISB), 2011 First IEEE International Conference on, pp. 250--257


Linking Semistructured Data on the Web
S. Hassas Yeganeh, O. Hassanzadeh, R. J. Miller
Proceedings of the 14th International Workshop on the Web and Databases (WebDB 2011)

Helix: Online Enterprise Data Analytics
Oktie Hassanzadeh, Songyun Duan, Achille Fokoue, Anastasios Kementsietsidis, Kavitha Srinivas, Michael J Ward
WWW (Companion Volume), pp. 225-228, ACM, 2011
Abstract

GBASE: a scalable and general graph management system
U Kang, H Tong, J Sun, C Y Lin, C Faloutsos
ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2011d, pp. 12

Community Discovery via Metagraph Factorization
Y R Lin, J Sun, H Sundaram, A Kelliher, P Castro, R Konuru
ACM Transactions on Knowledge Discovery from Data (TKDD) 5(3), 17, ACM, 2011


A Survey of Models and Algorithms for Social Influence Analysis
J Sun, J Tang
Social Network Data Analytics, 177--214, Springer, 2011


SolarMap: Multifaceted Visual Analytics for Topic Exploration
N Cao, D Gotz, J Sun, Y R Lin, H Qu
ICDM, 2011

iMet: Interactive Metric Learning in Healthcare Applications
F Wang, J Sun, J Hu, S Ebadollahi
SIAM Data Mining Conference, 2011

DICON: Interactive Visual Analysis of Multidimensional Clusters
N Cao, D Gotz, J Sun, H Qu
Visualization and Computer Graphics, IEEE Transactions on 17(12), 2581--2590, IEEE, 2011

Introduction to Special Issue on Large-Scale Data Mining
J Sun, Y Liu, J Tang, C Apte
ACM Transactions on Knowledge Discovery from Data (TKDD) 5(2), 7, ACM, 2011

Quantitative Study of Individual Emotional States in Social Networks
J Tang, Y Zhang, J Sun, J Rao, W Yu, Y Chen, A Fong
Affective Computing, IEEE Transactions on pp. 99, 1--1, IEEE, 2011

System and method for identifying document structure and associated metainformation
B K Boguraev, R J Byrd, K S F Cheng, A R Coden, M A Tanenblatt, W Teiken
US Patent 7,937,338

Experiences in implementing simulation-based support for operational decision making in semiconductor manufacturing
C H Chen-Ritzo, S Bagchi, L E Burns, S C Catlett
European Journal of Industrial Engineering 5(3), 272--291, Inderscience, 2011

Information Technology For Healthcare Transformation
J. P. Bigus, M. Campbell, B. Carmeli, M. Cefkin, H. Chang, C.-H. Chen-Ritzo, W. F. Cody, S. Ebadollahi, A. Evfimievski, A. Farkash, S. Glissmann, D. Gotz, T. W. A. Grandison, D. Gruhl, P. J. Haas, M. J. H. Hsiao, P.-Y. S. Hsueh, J. Hu, J. M. Jasinski, J.
IBM Journal of Research and Development - Special Issue on the Frontiers of IT, Vol 55, No 5, pp 6:1-6:14 55(5), 6--1, IEEE, 2011

Optimizing Consumption of Resources
V Bondar, C H Chen-Ritzo, II Rick Allen Hamilton, C A Pickover, R P Williams
US Patent App. 12/551,191

Quantitative Risk Assessment in Supply Chains: A Case Study Based on Engineering Risk Analysis Concepts
L A Deleris, F Erhun
Planning Production and Inventories in the Extended Enterprise, 105--131, Springer, 2011

The growth and performance diagnostics initiative: A multidimensional framework for sales performance analysis and management
M Singh, D Bhattacharjya, L Deleris, D Katz-Rogozhnikov, M Squillante, B Ray, A Mojsilovic, C Barrera, D Kakrania, J Richard, others
Serv. Sci 3(1), 82--98, 2011

A Web-based Tool for Expert Elicitation in Distributed Teams
C Spaccasassi, L Deleris
Bayesian Modeling Application Workshop at the Uncertainty in Artificial Intelligence (UAI) Conference, 2011

iMet: Interactive Metric Learning in Healthcare Applications
F. Wang, J. Sun, J. Hu, S. Ebadollahi
SIAM Conference on Data Mining, 2011

Privacy-aware querying over sensitive trajectory data
N Pelekis, A Gkoulalas-Divanis, M Vodas, D Kopanaki, Y Theodoridis
Proceedings of the 20th ACM international conference on Information and knowledge management, pp. 895--904, 2011

A Discriminative Approach to EEG Seizure Detection
A N Johnson, D Sow, A Biem
AMIA Annual Symposium Proceedings, pp. 1309, 2011

System and Method for Reinforcing Effectiveness of Health Education through Social Collaboration
Ci-Wei Lan, Mark Hsiao, Gilbert Liao, Selina YF Lee, P. Hsueh

Beyond Regional Health Information Exchange in China: A Practical and Industrial-Strength Approach
S Liu, B Zhou, G Xie, J Mei, H Liu, C Liu, L Qi
AMIA Annual Symposium Proceedings, pp. 824, 2011

Practical computer vision: example techniques and challenges
S Pankanti, L Brown, J Connell, A Datta, Q Fan, R Feris, N Haas, Y Li, N Ratha, H Trinh
IBM Journal of Research and Development 55(5), 2011

FINGERPRINT REPRESENTATION USING GRADIENT HISTOGRAMS
G Aggarwal, R M Bolle, T Jea, N K Ratha
EP Patent 2,289,020

Secure and robust iris recognition using random projections and sparse representations
J Pillai, V Patel, R Chellappa, N Ratha
Pattern Analysis and Machine Intelligence, IEEE Transactions on pp. 99, 1--1, IEEE, 2011

A Business Centric Monitoring Approach for Heterogeneous Service Composites
G.T. Lakshmanan, P.T. Keyser, A. Slominski, F. Curbera
Services Computing (SCC), 2011 IEEE International Conference on, pp. 671--678

Early chip planning cockpit
Jeonghee Shin, J A Darringer, Guojie Luo, A J Weger, C L Johnson
Design, Automation Test in Europe Conference Exhibition (DATE), 2011, pp. 1 -4

The self-assessment trap: can we all be better than average?
R. Norel, J.J. Rice, G. Stolovitzky
Molecular Systems Biology 7(1), Nature Publishing Group, 2011

METHOD AND SYSTEM FOR EVALUATING DATA
H Liu, S P Liu, J Mei, G T Xie, L H Yu
US Patent 20,110,295,906

Haemophilia Management: Time to Get Personal?
Tom E. Howard, Chen Yanover, Johnny Mahlangu, Amanda Krause, Kevin R. Viel, Carol K. Kasper, Kathleen P. Pratt
Haemophilia 17(5), 721--728, 2011

Large-scale characterization of peptide-MHC binding landscapes with structural simulations
Chen Yanover, Philip Bradley
Proceedings of the National Academy of Sciences of the United States of America 108(17), 6981--6986, 2011

Pharmacogenetics and the immunogenicity of protein therapeutics
Chen Yanover, Nisha Jain, Glenn Pierce, Tom E Howard, Zuben E Sauna
Nature biotechnology 29(10), 870--873, 2011

Clustered multi-task learning via alternating structure optimization
J. Zhou, J. Chen, J. Ye
Proceedings of the Conference on Advances in Neural Information Processing Systems (NIPS), 2011

A multi-task learning formulation for predicting disease progression
J. Zhou, L. Yuan, J. Liu, J. Ye
Proceedings of the 17th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 814--822, 2011

Integrating low-rank and group-sparse structures for robust multi-task learning
J. Chen, J. Zhou, J. Ye
Proceedings of the 17th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 42--50, 2011

Information Technology For Healthcare Transformation
J. P. Bigus, M. Campbell, H. Chang, C. Chen-Ritzo, J. M. Jasinski, R. K. Sorrentino, S. Ebadollahi, D. Gotz, T. W. A. Grandison, P. S. Hsueh, J. Hu, M. S. Kohn, C. Neti, S. Ramakrishnan, J. Sun, R. Yaesoubi, X. Zhu, B. Carmeli, A. Farkash, H. Nelken, H. N
IBM Centennial Paper, 2011

Reducing corrosion and water decomposition on a surface of a titanium nitride electrode, US Patent Application 20110308969A1
A. Afzali-Ardakani, S. Ahmed, H. Deligianni, S. Harrer, B. Luan, G. J. Martyna, H. Peng, S. Polonsky, S. Rossnagel, X. Shao, G. A. Stolovitzky

Nano-fluidic field effective device to control DNA transport through a nano channel comprising a set of electrodes, WO Patent Application 2011160989
B. Luan, G. J. Martyna, D. Newns, S. Polonsky, G. A. Stolovitzky, H. Peng, S. Rossnagel, S. Harrer, A. Afzali-Ardakani


DATA LIFECYCLE MANAGEMENT WITHIN A CLOUD COMPUTING ENVIRONMENT
G. Alatorre, R. Ayala, K. Chavda, S. Gopisetty, A. Singh
US Patent 20,110,314,069

HIWAS - Enabling Technology for Analysis of Clinical Data in XML Documents
Peter Schwarz, Joshua Hui, and Sarah Knoop
Proceedings of the VLDB Endowment 4(12), 2011

Method and system for cleansing sequence-based data at query time
L.S. Colby, S.T. Doraiswamy, J. Rao, H. Thakkar, others
US Patent 8,015,176

A Radial Self-Calibrated (RASCAL) GRAPPA method using Weight Interpolation
N.C.F. Codella, P. Spincemaille, M. Prince, Y. Wang
NMR in biomedicine 24(7), 844, NIH Public Access, 2011

Hashing with Graphs
W. Liu and J. Wang and S. Kumar and S.-F. Chang
The 28th International Conference on Machine Learning, 2011

Lost in Binarization: Query-Adaptive Ranking for Similar Image Search with Compact Codes
Y.-G. Jiang and J. Wang and Shih-Fu Chang
Proceedings of ACM International Conference on Multimedia Retrieval , 2011

Closing the loop in Cortically- Coupled Computer Vision: a BCI for searching image databases
E. Pohlmeyer, J. Wang, D. C. Jangraw, B. Lou, S.-F. Chang, and P. Sajda
Journal of Neural Engineering 8(3), 2011

System and Method for Annotating and Search Media
S.-F. Chang and J. Wang and T. Jebara
US Patent APP. 13/165,553

Exploring transcription regulation through cell-to-cell variability
R. Rinott, A. Jaimovich, N. Friedman
Proceedings of the National Academy of Sciences 108(15), 6329, National Acad Sciences, 2011

Evicase: an evidence-based case structuring approach for personalized healthcare.
Boaz Carmeli, Paolo Casali, Anna Goldbraich, Abigail Goldsteen, Carmel Kent, Lisa Licitra, Paolo Locatelli, Nicola Restifo, Ruty Rinott, Elena Sini, others
Studies in health technology and informatics180, 604--608, 2011

Ontology-based Knowledge Management for Personalized Adverse Drug Events Detection.
F. Cao, X. Sun, X. Wang, B. Li, J. Li, Y. Pan
Studies in health technology and informatics169, 699, 2011

REQUEST PROCESSING SYSTEM, METHOD AND PROGRAM PRODUCT
T. Ogasawara
US Patent App. 13/104,710

MINING TEMPORAL PATTERNS IN LONGITUDINAL EVENT DATA USING DISCRETE EVENT MATRICES AND SPARSE CODING
S. Ebadollahi, J. Hu, M.S. Kohn, N. Lee, R.K. Sorrentino, J. Sun, F. Wang
US Patent App. 13/011,632

Visual Cluster Analysis in Support of Clinical Decision Intelligence
D. Gotz, J. Sun, N. Cao, S. Ebadollahi
AMIA Annual Symposium Proceedings, pp. 481, 2011

Electrochemical Protection of Thin Film Electrodes in Solid State Nanopores
S. Harrer, P. S. Waggoner, B. Luan, A. Afzali-Ardakani, D. L. Goldfarb, H. Peng, G. Martyna, S. M. Rossnagel, G. A. Stolovitzky
Nanotechnology 22(27), 275304, IOP Publishing, 2011

Characterizing and Controlling the Motion of ssDNA in a Solid-State Nanopore
B. Luan, G. Stolovitzky, H. Peng, S. Harrer, P. Waggoner, S. Polonsky, S. Rossnagel, and G. Martyna
Biophysical Journal 100(3), 168, Elsevier, 2011

VISUAL ENHANCEMENT OF A DATA RECORD
Ohad GREENSHPAN, Ariel FARKASH
WO Patent 2,011,144,531

Bringing research to the point of care: Hypergenes project study.
Edward Vitkin, Hani Neuvirth-Telem, Boaz Carmeli, Amnon Shabo, Ariel Farkash
Studies in health technology and informatics180, 1010--1014, 2011

DYNAMIC ADAPTIVE PROCESS DISCOVERY AND COMPLIANCE
F. CURBERA, P. KEYSER, R. KHALAF, G. LAKSHMANAN, others
WO Patent 2,011,139,393


INTELLIGENT CONTENT DISCOVERY FOR CONTENT CONSUMERS
G.T. Lakshmanan, M. Oberhofer
US Patent App. 13/018,045

Linked open drug data for pharmaceutical research and development
M. Samwald, A. Jentzsch, C. Bouton, C. Kalles\oe, E. Willighagen, J. Hajagos, M. Marshall, E. Prud'hommeaux, O. Hassanzadeh, E. Pichler, others
Journal of cheminformatics 3(1), 19, Chemistry Central Ltd, 2011

Non-lambertian reflectance modeling and shape recovery of faces using tensor splines
R. Kumar, A. Barmpoutis, A. Banerjee, B.C. Vemuri
Pattern Analysis and Machine Intelligence, IEEE Transactions on 33(3), 533--567, IEEE, 2011

Maximizing all margins: Pushing face recognition with Kernel Plurality
R. Kumar, A. Banerjee, B.C. Vemuri, H. Pfister
Computer Vision (ICCV), 2011 IEEE International Conference on, pp. 2375--2382

Detection of neuron membranes in electron microscopy images using multi-scale context and radon-like features
M. Seyedhosseini, R. Kumar, E. Jurrus, R. Giuly, M. Ellisman, H. Pfister, T. Tasdizen
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2011, 670--677, Springer

Multi-frame radial basis functions to combine shape and speckle tracking for cardiac deformation analysis in echocardiography
Colin Compas, Ben Lin, Smita Sampath, Congxian Jia, Qifeng Wei, Albert Sinusas, James Duncan
Functional Imaging and Modeling of the Heart, 113--120, Springer, 2011

Combining shape and speckle tracking for deformation analysis in echocardiography using radial basis functions
Colin B Compas, Ben A Lin, Smita Sampath, Albert J Sinusas, James S Duncan
Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on, pp. 1322--1325

Comparing Shape Tracking, Speckle Tracking, and a Combined Method for Deformation Analysis in Echocardiography
Colin B Compas, Ben A Lin, Smita Sampath, Lingyun Huang, Qifeng Wei, Albert J Sinusas, James S Duncan
Healthcare Informatics, Imaging and Systems Biology (HISB), 2011 First IEEE International Conference on, pp. 120--125

Novel method for pharmacophore analysis by examining the joint pharmacophore space
Sayan Ranu, Ambuj Singh
Journal of Chemical Information and Modeling, 2011

Probabilistic Substructure Mining From Small Molecule Screens
Sayan Ranu, Bradley T. Calhoun, Ambuj Singh, Joshua Swamidass
Molecular Informatics, 2011

Smarter log analysis
E Aharoni, S Fine, Y Goldschmidt, O Lavi, O Margalit, M Rosen-Zvi, L Shpigelman
IBM Journal of Research and Development 55(5), 10:1 - 10:10 , IBM, 2011

Local complex phase based level set and its application to DIC red blood cell segmentation
Taoyi Chen, Yong Zhang, Changhong Wang, Zhenshen Qu, Maomao Cai, Fei Wang, T Syeda-Mahmood
Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on, pp. 187--190

Automatic classification of images of an angiography sequence using modified shape context-based spatial pyramid kernels
Fei Wang, Yong Zhang, Hayit Greenspan, Tanveer Syeda-Mahmood, David Beymer
Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on, pp. 1091--1096

Parametric and Non-Parametric Clustering for Segmentation
Hayit Greenspan, Tanveer Syeda-Mahmood
Biomedical Image Processing, pp. 227--250, Springer Berlin Heidelberg, 2011

Pyramid histograms of motion context with application to angiogram video classification
Fei Wang, Yong Zhang, David Beymer, Hayit Greenspan, Tanveer Syeda-Mahmood
Functional Imaging and Modeling of the Heart, pp. 384--391, Springer, 2011

Proceedings of the Second MICCAI international conference on Medical Content-Based Retrieval for Clinical Decision Support
Henning M\"uller, Hayit Greenspan, Tanveer Syeda-Mahmood
Springer-Verlag, 2011

Privacy and Security in Data Mining and Machine Learning
A. Gkoulalas-Divanis, V.S. Verykios, Y. Saygin
Transactions on Data Privacy, Special Issue 4(3), 2011

Assembly Error Detection
L Parida, N Haiminen
US Patent Application 13/010,949

Topological Indexing and Mining of Chemical Compounds
Sayan Ranu, Ambuj Singh
BCB, 2011

Active 3D object localization using a humanoid robot
Alexander Andreopoulos, Stephan Hasler, Heiko Wersing, Herbert Janssen, John K. Tsotsos, Edgar Korner
Robotics, IEEE Transactions on 27(1), 47--64, IEEE, 2011

Predictive Analytics for Semi-structured Case Oriented Business Processes
Geetika T Lakshmanan, Songyun Duan, Paul T Keyser, Francisco Curbera, Rania Khalaf
Business Process Management Workshops, pp. 640--651, 2011

Provenance in Web Applications
Geetika T Lakshmanan, Francisco Curbera, Juliana Freire, Amit Sheth
IEEE Internet Computing, 17--21, IEEE Computer Society, 2011

Functionalizing a Nanopore with Nano-Electrodes Towards the Control of the Translocation of DNA with Single Base Resolution
H. Peng, B. Luan, P. S. Waggoner, S. Harrer, G. J. Martyna, S. Polonsky, S. M. Rossnagel, G. A. Stolovitzky
Biophysical Journal100, 169, 2011

Dynamic accessibility: accommodating differences in ability and situation
Amy Hurst, Krzysztof Gajos, Leah Findlater, Jacob Wobbrock, Andrew Sears, Shari Trewin
Proceedings of the 2011 annual conference extended abstracts on Human factors in computing systems, pp. 41-44

Prospective gene signature study using microRNA to identify the tissue of origin in patients with carcinoma of unknown primary
Gauri R Varadhachary, Yael Spector, James L Abbruzzese, Shai Rosenwald, Huamin Wang, Ranit Aharonov, Heather R Carlson, Dalia Cohen, Siddharth Karanth, Joanna Macinskas, others
Clinical Cancer Research 17(12), 4063--4070, AACR, 2011

Accurate classification of metastatic brain tumors using a novel microRNA-based test
Wolf C Mueller, Yael Spector, Tina Bocker Edmonston, Brianna St Cyr, Diana Jaeger, Ulrike Lass, Ranit Aharonov, Shai Rosenwald, Ayelet Chajut
The oncologist 16(2), 165--174, AlphaMed Press, 2011


A Second Order Discretization of Maxwell's Equations in the Quasi-Static Regime on OcTree Grids
Lior Horesh, Eldad Haber
SIAM Journal on Scientific Computing 33(5), 2805--2822, SIAM, 2011

Increasing the speed of solid-state nanopores
P.S. Waggoner, A.T. Kuan, S. Polonsky, H. Peng, S.M. Rossnagel
Journal of Vacuum Science & Technology B: Microelectronics and Nanometer Structures 29(3), 032206-032211, AVS, 2011
Abstract

Method to fabricate cross slit nanopore for molecules passing through
J. Bai, S. Polonsky, S. Harrer, and S.M. Rossnagel
Patent US2013/536915A1

Trapping molecular segments in nano-gaps
Venkat SK Balagurusamy, Stanislav Polonsky
Patent US20130043131A1
US Patent 20,130,043,131

Nano-fluidic field effective device to control DNA transport through a nano channel comprising a set of electrodes
B. Luan, G.J. Martyna, D. Newns, S. Polonsky, G.A. Stolovitzky, H. Peng, S. Rossnagel, S. Harrer, and A. Afzali-Ardakani
Patent US20110308949A1

Piezoelectric-based nanopore device for the active control of the motion of polymers through the same
H. Peng, G.A. Stolovitzky, S.M. Rossnagel, S. Polonsky, B. Luan, G.J. Martyna
US Patent 8,039,250

Systems and Methods for Controlling the Position of a Charged Polymer Inside a Nanopore
S. Polonsky, S.M. Rossnagel, and G.A. Stolovitzky
000670621C12Q 1/68,G01N 27/30435/ 6,204/40301,435/006,204/40301
Abstract

Digital traces of interest: Deriving interest relationships from social media interactions
Michal Jacovi, Ido Guy, Inbal Ronen, Adam Perer, Erel Uziel, Michael Maslenko
ECSCW 2011: Proceedings of the 12th European Conference on Computer Supported Cooperative Work, 24-28 September 2011, Aarhus Denmark, pp. 21--40, Springer London

Do you want to know?: recommending strangers in the enterprise
Ido Guy, Sigalit Ur, Inbal Ronen, Adam Perer, Michal Jacovi
Proceedings of the ACM 2011 conference on Computer supported cooperative work, pp. 285--294, ACM

Summaries: A special issue on Evaluation for Information Visualization
Enrico Bertini, Heidi Lam, Adam Perer
Information Visualization 10(3), 161--161, SAGE Publications, 2011

Unearthing People from the SaND: Relationship Discovery with Social Media in the Enterprise.
Adam Perer, Ido Guy, Erel Uziel, Inbal Ronen, Michal Jacovi
ICWSM, 2011

Dynamic distribution of content
Boaz Carmeli, Tzilla Eshel, Roni Ram
US Patent 7,937,400

Liveness monitoring in a publish/subscribe messaging system
Boaz Carmeli, John J Duigenan, Gidon Gershinsky, Stephen J Todd, Graham D Wallis
US Patent 7,970,828

Load estimation in user-based environments
Dorit Baras, Boaz Carmeli, Ohad Greenshpan, Edward Vitkin
US Patent App. 13/007,684

Hierarchical RFID
Boaz Carmeli
US Patent 8,040,242

Visualization of patient treatments
Boaz Carmeli, Carmel Gerda Kent, Yonatan Maman, Yoav Rubin, Noam Slonim
US Patent App. 13/195,870

Simulation-based models of emergency departments:: Operational, tactical, and strategic staffing
Sergey Zeltyn, Yariv N Marmor, Avishai Mandelbaum, Boaz Carmeli, Ohad Greenshpan, Yossi Mesika, Sergev Wasserkrug, Pnina Vortman, Avraham Shtub, Tirza Lauterman, others
ACM Transactions on Modeling and Computer Simulation (TOMACS) 21(4), 24, ACM, 2011

Language Translation Tools Drive Productivity Improvements for Global Delivery of Services
Hideo Watanabe, Nanda Kambhatla, Hironori Takeuchi, Hiroshi Kanayama, Yohei Ikawa, Junya Shimizu, Takuya Mishina, Hitoshi Akimoto, Swati Challa
SRII Global Conference (SRII), 2011 Annual, pp. 465--471

An Integrated Framework of Service Quality for Global Delivery of Contact Center Services
Duggirala, M., Kambhatla, N., Polavarapu, R., & Garg, D
Annual SRII Global Conference 2011, pp. 557--564

Cell-to-cell variability of alternative RNA splicing
Zeev Waks, Allon M Klein, Pamela A Silver
Molecular systems biology 7(1), Wiley Online Library, 2011

Visualization of single mRNAs reveals temporal association of proteins with microRNA-regulated mRNA
Joseph D Shih, Zeev Waks, Nancy Kedersha, Pamela A Silver
Nucleic acids research 39(17), 7740--7749, Oxford Univ Press, 2011

Supervised particle filter for tracking 2D human pose in monocular video
Suman Sedai, Du Q Huynh, Mohammed Bennamoun
Applications of Computer Vision (WACV), 2011 IEEE Workshop on, pp. 367--373

Extensive protein and DNA backbone sampling improves structure-based specificity prediction for C2H2 zinc fingers
Chen Yanover, Philip Bradley
Nucleic acids research 39(11), 4564--4576, Oxford Univ Press, 2011

Machine learning competition in immunology--Prediction of HLA class I binding peptides
Guang Lan Zhang, Hifzur Rahman Ansari, Phil Bradley, Gavin C Cawley, Tomer Hertz, Xihao Hu, Nebojsa Jojic, Yohan Kim, Oliver Kohlbacher, Ole Lund, others
Journal of immunological methods 374(1), 1--4, Elsevier, 2011

Optimizing energy functions for protein--protein interface design
OZ Sharabi, Chen Yanover, Ayelet Dekel, Julia M Shifman
Journal of computational chemistry 32(1), 23--32, Wiley Online Library, 2011

Privacy in mobility data mining.
Aris Gkoulalas-Divanis, Y\"ucel Saygin, Dino Pedreschi
SIGKDD Explorations 13(1), 4--5, 2011

Privacy Challenges and Solutions for Medical Data Sharing
Aris Gkoulalas-Divanis, G LOUKIDES
ECML PKDD, 2011

Privacy and Security Issues in Data Mining and Machine Learning
Christos Dimitrakakis Aris Gkoulalas-Divanis, Aikaterini Mitrokotsa Vassilios S Verykios, Y\"ucel Saygin
Divanis, AMVS Verykios, Y Saygin - 2011 - Springer, Springer

A privacy-aware query engine for sensitive trajectory data
N Pelekis, A Gkoulalas-Divanis, M Vodas, D Kopanakis, Y Theodoridis
Proceedings of the 20 th ACM Conference on Information and Knowledge Management (CIKM'11), 2011

Multiscale analysis revisited: Detection of drusen and vessel in digital retinal images
Yuanjie Zheng, Hongzhi Wang, Jue Wu, Jianbin Gao, James C Gee
Biomedical Imaging: From Nano to Macro, 2011 IEEE International Symposium on, pp. 689--692

The effect of gossip on social networks
Allison K Shaw, Milena Tsvetkova, Roozbeh Daneshvar
Complexity 16(4), 39--47, Wiley Online Library, 2011

Preface for the Special Issue on Privacy-Aspects of Data Mining
Aris Gkoulalas-Divanis, Kun Liu, Vassilios S Verykios, Ran Wolff
Journal of Computing Science and Engineering 5(3), 167--168, 2011

Image denoising by Bayesian Regression
Shimon Cohen, Rami Ben-Ari
ICIAP, 2011

Knowledge management system automatically allocating expert resources
Yael Ravin, James J Sharpe, Edith H Stern
US Patent 7,865,457

Name resolution
Patrick O'sullivan, Fred Raguillat, Edith H Stern, Barry E Willner
US Patent App. 13/164,214

System and method for enhancing security applications
Chitra Dorai, Edith H Stern, Barry E Willner
US Patent 7,899,210

Multiple electronic identity recognition
Patrick O'sullivan, Fred Raguillat, Edith H Stern, Barry E Willner
US Patent App. 13/164,243


Usage analysis for smart meter management
Hongfei Li, Dongping Fang, Shilpa Mahatma, Arun Hampapur
Emerging Technologies for a Smarter World (CEWIT), 2011 8th International Conference \& Expo on, pp. 1--6

Analytics-driven asset management
A Hampapur, H Cao, A Davenport, WS Dong, D Fenhagen, RS Feris, G Goldszmidt, ZB Jiang, J Kalagnanam, T Kumar, others
IBM Journal of Research and Development 55(1.2), 13--1, IBM, 2011

System and method for failure association analysis
Wei Shan Dong, Rogerio S Feris, Arun Hampapur, Zhong Bo Jiang, Shilpa N Mahatma, Wei Sun, Lexing Xie
US Patent App. 12/984,019

Design specific joint optimization of masks and sources on a very large scale
K. Tian, F. Barahona, T. Inoue, M. Sakamoto
in Optical Microlithography XXIV, Mircea V. Dusa (Ed.), Proceedings of SPIE, pp. 797308, 2011

Evaluating visual and statistical exploration of scientific literature networks
Robert Gove, Cody Dunne, Ben Shneiderman, Judith Klavans, Bonnie Dorr
Visual Languages and Human-Centric Computing (VL/HCC), 2011 IEEE Symposium on, pp. 217--224

NetVisia: Heat map \& matrix visualization of dynamic social network statistics \& content
Robert Gove, Nick Gramsky, Rose Kirby, Emre Sefer, Awalin Sopan, Cody Dunne, Ben Shneiderman, Meirav Taieb-Maimon
Privacy, Security, Risk and Trust (PASSAT) and 2011 IEEE Third Inernational Conference on Social Computing (SocialCom), 2011 IEEE Third International Conference on, pp. 19--26

Action Science Explorer: tools for rapid understanding of scientific literature
Cody Dunne, Ben Shneiderman, Robert Gove, Judith Klavans, Bonnie Dorr
Human-Computer Interaction Lab Tech Report HCIL-2011, University of Maryland

Understanding scientific literature networks: an evaluation of action science explorer
Robert Gove, Cody Dunne, Ben Shneiderman, Judith Klavans, Bonnie Dorr
University of Maryland Technical Report (March 2011), Citeseer

2d nonrigid partial shape matching using mcmc and contour subdivision
Yu Cao, Zhiqi Zhang, Irina Czogiel, Ian Dryden, Song Wang
Computer Vision and Pattern Recognition (CVPR), 2011 IEEE Conference on, pp. 2345--2352

A Multichannel Edge-Weighted Centroidal Voronoi Tessellation algorithm for 3D super-alloy image segmentation
Yu Cao, Lili Ju, Qin Zou, Chengzhang Qu, Song Wang
Computer Vision and Pattern Recognition (CVPR), 2011 IEEE Conference on, pp. 17--24

The role of blood pressure variability in misdiagnosed clinic hypertension
Amos Cahan, Iddo Z Ben-Dov, Judith Mekler, Michael Bursztyn
Hypertension Research 34(2), 187--192, Nature Publishing Group, 2011

Suppression of FoxO1 activity by long-chain fatty acyl analogs
Ghadeer Zatara, Rachel Hertz, Maayan Shaked, Nina Mayorek, Etedal Morad, Etty Grad, Amos Cahan, Haim D Danenberg, Terry G Unterman, Jacob Bar-Tana
Diabetes 60(7), 1872--1881, Am Diabetes Assoc, 2011

Intervisit blood pressure variability and outcome: is heart rate a missing confounder?
Iddo Z Ben-Dov, Amos Cahan, Michael Bursztyn
Hypertension 58(1), e1--e1, Am Heart Assoc, 2011

a 44-year-old man with cavitary pneumonia and shock
A Shaulov, S Benenson, A Cahan, N Hiller, M Korem
The Netherlands journal of medicine 69(9), 402--406, 2011

Evaluation of visualization of the prostate gland in vibro-elastography images
S Sara Mahdavi, Mehdi Moradi, Xu Wen, William J Morris, Septimiu E Salcudean
Medical image analysis 15(4), 589--600, Elsevier, 2011

Evaluating the investors’ overreaction to financial measures: some evidence of Tehran stock exchange
Mehdi Moradi, Mahdi Salehi
International Journal of Academic Research 3(2), 921--929, 2011

A robotic system for intra-operative trans-rectal ultrasound and ultrasound elastography in radical prostatectomy
Troy Adebar, Septimiu Salcudean, Sara Mahdavi, Mehdi Moradi, Christopher Nguan, Larry Goldenberg
Information Processing in Computer-Assisted Interventions, pp. 79--89, Springer, 2011

Brachytherapy seed reconstruction with joint-encoded C-arm single-axis rotation and motion compensation
Ehsan Dehghan, Ameet K Jain, Mehdi Moradi, Xu Wen, W James Morris, Septimiu E Salcudean, Gabor Fichtinger
Medical image analysis 15(5), 760--771, Elsevier, 2011

Prostate implant reconstruction from C-arm images with motion-compensated tomosynthesis
Ehsan Dehghan, Mehdi Moradi, Xu Wen, Danny French, Julio Lobo, W James Morris, Septimiu E Salcudean, Gabor Fichtinger
Medical physics 38(10), 5290--5302, American Association of Physicists in Medicine, 2011

Tissue classification using depth-dependent ultrasound time series analysis: in-vitro animal study
Farhad Imani, Mohammad Daoud, Mehdi Moradi, Purang Abolmaesumi, Parvin Mousavi
SPIE Medical Imaging, pp. 79680F--79680F, 2011

Towards intra-operative prostate brachytherapy dosimetry based on partial seed localization in ultrasound and registration to C-arm fluoroscopy
Mehdi Moradi, S Sara Mahdavi, Sanchit Deshmukh, Julio Lobo, Ehsan Dehghan, Gabor Fichtinger, William J Morris, Septimiu E Salcudean
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2011, pp. 291--298, Springer Berlin Heidelberg

Quantifying stranded implant displacement following prostate brachytherapy
Julio Lobo, Mehdi Moradi, Nick Chng, Ehsan Dehghan, Gabor Fichtinger, William Morris, Septimiu Salcudean
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2011, 307--314, Springer


Detection of crossing white matter fibers with high-order tensors and rank-k decompositions
Fangxiang Jiao, Yaniv Gur, Chris R Johnson, Sarang Joshi
Information Processing in Medical Imaging (IPMI), pp. 538--549, 2011

Geometric correspondence for ensembles of nonregular shapes
Manasi Datar, Yaniv Gur, Beatriz Paniagua, Martin Styner, Ross Whitaker
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2011, pp. 368--375, Springer

A learning-based wrapper method to correct systematic errors in automatic image segmentation: consistently improved performance in hippocampus, cortex and brain segmentation
Hongzhi Wang, Sandhitsu R Das, Jung Wook Suh, Murat Altinay, John Pluta, Caryne Craige, Brian Avants, Paul A Yushkevich
NeuroImage 55(3), 968--985, Elsevier, 2011

Landmark matching based automatic retinal image registration with linear programming and self-similarities
Yuanjie Zheng, Allan A Hunter III, Jue Wu, Hongzhi Wang, Jianbin Gao, Maureen G Maguire, James C Gee
Information Processing in Medical Imaging, pp. 674--685, 2011

Information-based sequential selection of clinical tests in risk assessment.
Naama Parush, Tal El-Hay, Michal Ozery-Flato, Ligita Ryliskyte, Zydrune Visockiene, Aleksandras Laucevicius
Studies in health technology and informatics180, 781--785, 2011

Detection of drug resistance mutations at low plasma HIV-1 RNA load in a European multicentre cohort study
Mattia CF Prosperi, Nicola Mackie, Simona Di Giambenedetto, Maurizio Zazzi, Ricardo Camacho, Iuri Fanti, Carlo Torti, Anders S\"onnerborg, Rolf Kaiser, Francisco M Codo\~ner, others
Journal of antimicrobial chemotherapy, dkr171, Br Soc Antimicrob Chemo, 2011

Feasibility of high-frequency QRS analysis in patients with acute myocardial infarction
Guy Amit, Ori Galante, Oded Luria, Linda R Davrath, Shimon Abboud, Eran Toledo, Doron Zahger
Journal of Electrocardiology 44(6), 743, Churchill Livingstone, 2011

Electrocardiographic depolarization changes during ischemia in the isolated perfused guinea pig heart
Guy Amit, Jana Kol'akov'a, Angel Zeitoune, Shimon Abboud, Marie Nov'akov'a
Journal of Electrocardiology 44(2), e23--e24, Churchill Livingstone, 2011

Analysis of depolarization abnormalities in the evaluation of patients with chest pain
Ori Galante, G Amit, O Luria, LR Davrath, S Abboud, D Zahger
Eur Heart J 32(suppl 1), 729, 2011

Guided Rule Discovery in XCS for High-Dimensional Classification Problems
M Abedini, M Kirley
AI 2011: Advances in Artificial Intelligence, 1--10, Springer

Automatic detection of inconsistencies between free text and coded data in Sarcoma discharge letters.
Ruty Rinott, Michele Torresani, Rossella Bertulli, Abigail Goldsteen, Paolo Casali, Boaz Carmeli, Noam Slonim
Studies in health technology and informatics180, 661--666, 2011

Toward personalized care management of patients at risk: the diabetes case study
Hani Neuvirth, Michal Ozery-Flato, Jianying Hu, Jonathan Laserson, Martin S Kohn, Shahram Ebadollahi, Michal Rosen-Zvi
Proceedings of the 17th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 395--403, 2011

Comparing Three Basic Models for Seasonal Influenza
Edlund, S., Kaufman J., Lessler J., Douglas J., Bromberg M., Kaufman Z., Bassal R., Chodick G., Marom R., Shalev V., Mesika Y., Ram R., Leventhal A.
Epidemics Journal 3(3), 136-142, 2011

Medical Data Sharing: Privacy Challenges and Solutions
A Gkoulalas-Divanis, G Loukides
ECML/PKDD Tutorial, 2011

On balancing disclosure risk and data utility in transaction data sharing using RU confidentiality map
G Loukides, A Gkoulalas-Divanis, J Shao
Joint UNECE/Eurostat work session on statistical data confidentiality, 2011

A publication process model to enable privacy-aware data sharing
A Gkoulalas-Divanis, E W Cope
IBM Journal of Research and Development (Special Issue for the 100th Anniversary of IBM) 55(5), 8:1-8:10, IEEE, 2011

Associative classification rules hiding for privacy preservation
J Natwichai, X Sun, X Li
International Journal of Intelligent Information and Database Systems 5(3), 246--270, Inderscience, 2011

Image modality classification: a late fusion method based on confidence indicator and closeness matrix
X Sun, L Gong, A Natsev, X Teng, L Tian, T Wang, Y Pan
Proceedings of the 1st ACM International Conference on Multimedia Retrieval, pp. 55, 2011

Privacy in mobility data mining
A Gkoulalas-Divanis, Y Saygin, D Pedreschi
ACM SIGKDD Explorations Newsletter 13(1), 4--5, ACM, 2011

WELLNESS DECISION SUPPORT SERVICES
P. Hsueh, S. Ramakrishnan, M. Hsiao

Health Management Application Development and Deployment Framework
L. Zeng, P. Hsueh, H. Chang

The New World Of Evidence-based Medicine: Thinking Beyond Randomized Controlled Trials.
Grandison et al.
Journal of American Medical Informatics (JAMIA), 2011

Privacy Protection Issues for Healthcare Wellness Clouds
Grandison, T., Hsueh, P., Zeng, L., Chang, H.
Privacy Protection Measures and Technologies in Business Organizations , 2011

Outcome-driven Service Composition in GreenOlive Intelligent Living Platform
Zeng, L., Hsueh, P., and X. Zhu
The 13th International Congress on Medical Informatics (MIE 2011) (TOP PIC CONFERENCE)

HIWAS: Enabling Technology for Analysis of Clinical Data in XML Documents
Joshua Hui, Sarah Knoop, Peter Schwarz
37th International Conference on Very Large Data Bases (VLDB) 2011
Abstract

Verification of systems biology research in the age of collaborative competition
P. Meyer, L. G. Alexopoulos, T. Bonk, A. Califano, C. R. Cho, A. de la Fuente, D. de Graaf, A. J. Hartemink, J. Hoeng, N. V. Ivanov, H. Koeppl, R. Linding, D. Marbach, R. Norel, M. C. Peitsch, J. J. Rice, A. Royyuru, F. Schacherer, J. Sprengel, K. Stolle,
Nat. Biotechnol. 29(9), 811--815, 2011

PCTA: Privacy-constrained Clustering-based Transaction Data Anonymization
A. Gkoulalas-Divanis, G. Loukides
4th International Workshop on Privacy and Anonymity in the Information Society, pp. 5, ACM, 2011


2010

Spatial and temporal variation in PaO2 in the pulmonary acinus
Swan, Annalisa J and Clark, Alys R and Tawhai, Merryn H
B71. TAMING LUNG AND VASCULAR HETEROGENEITY BY MATH AND ENGINEERING, pp. A3645--A3645, American Thoracic Society, 2010
Abstract

Electronic mail duplicate detection
Danish Contractor, Manjula Golla Hosurmath, Sachindra Joshi, Kenney Ng

E-mail thread hierarchy detection
Danish Contractor, Manjula Golla Hosurmath, Sachindra Joshi, Kenney Ng


Using XFDU for CASPAR information packaging
M Dunckley, S Ronen, E Henis, S Rabinovici-Cohen, P Reshef, D Giaretta, E Conway
OCLC Systems & Services: International Digital Library Perspectives, Vol. 26 No. 2, 2010 26(2)

Preservation DataStores chapter
S Rabinovici-Cohen, E Henis, P Reshef, S Ronen
Advanced Digital Preservation book, 2010

Self-contained Information Retention Format (SIRF) Use Cases and Functional Requirements
S Rabinovici-Cohen, M Baker, S Fineberg, R Cummings
SNIA Draft Technical Work available for Public Review, 2010

Continuous-Time Belief Propagation
T El-Hay, I Cohn, N Friedman, R Kupferman
Proc. Twenty Seventh International Conf. on Machine Learning (ICML), 2010

Mean Field Variational Approximation for Continuous-Time Bayesian Networks
I Cohn*, T El-Hay*, N Friedman, R Kupferman
Journal of Machine Learning Research 11(Oct), 2745, 2010

Social navigation for the spoken web
R G Farrell, N Rajput, R Das, C Danis, K Dhanesha
Proceedings of the fourth ACM conference on Recommender systems, pp. 333--336, ACM, 2010

A Picture and a Thousand Words: Visual Scaffolding for Mobile Communication in Developing Regions
Robert Farrell, Catalina Danis, Thomas Erickson, Jason Ellis, Jim Christensen, Mark Bailey, Wendy A Kellogg
International Journal of Handheld Computing Research (IJHCR) 1(4), 81--95, IGI Global, 2010

Digital media voice tags in social networks
Mark Bailey, James E Christensen, Catalina M Danis, Jason B Ellis, Thomas D Erickson, Robert G Farrell, Wendy A Kellogg
US Patent App. 12/718,041

A Picture and a Thousand Worlds: Visual Scaffolding for the Developing World.
Farrell, R. G., Danis, C. M., Erickson, T., Ellis, J. B., Christensen, J. E. Bailey, M. and Kellogg, W. A.
International Journal of Handheld Computing Research, 2010

Base-By-Base Ratcheting of Single Stranded DNA through a Solid-State Nanopore
B Luan, H Peng, S Polonsky, S Rossnagel, G Stolovitzky, G Martyna
Physical Review Letters 104(23), 238103, APS, 2010
Abstract   Copyright (C) 2010 The American Physical SocietyPlease report any problems to prola@aps.orgPRL

Characterize and Control the Motion of DNA in a Solid-State Nanopore
B Luan, G Stolovitzky, G Martyna
Bulletin of the American Physical Society55, APS, 2010

When the optimal is not the best: parameter estimation in complex biological models.
Fernandez Slezak D, Suarez C, Cecchi GA, Marshall G, Stolovitzky G.
PLoS One. 2010 Oct 25;5(10):e13283

The Spatiotemporal Epidemiological Modeler
Edlund, S., Davis, M., Kaufman, J.
1st ACM International Health Informatics Symposium, 2010

Evaluation of BIC and cross validation for model selection on sequence segmentations
N Haiminen, H Mannila
International Journal of Data Mining and Bioinformatics 4(6), 675--700, Inderscience, 2010

Detecting novel genes with sparse arrays
Arvas, N Haiminen, Smit, Rautio, Vitikainen, Wiebe, Martinez, Chee, Kunkel, Sanche, Nelson, Pakula, Saloheimo, Penttila, Kivioja
Gene 467(1-2), 41--51, Elsevier, 2010

One-class matrix completion with low-density factorizations
V Sindhwani, S S Bucak, J Hu, A Mojsilovic
Data Mining (ICDM), 2010 IEEE 10th International Conference on, pp. 1055--1060

A System for Mining Temporal Physiological Data Streams for Advanced Prognostic Decision Support
J Sun, D Sow, J Hu, S Ebadollahi
Data Mining (ICDM), 2010 IEEE 10th International Conference on, pp. 1061--1066


FORECASTING PRODUCT/SERVICE REALIZATION PROFILES
J Hu, A Mojsilovic
US Patent App. 12/727,118

Real-time prognosis of ICU physiological data streams
D Sow, A Biem, J Sun, J Hu, S Ebadollahi
Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE, pp. 6785--6788

Online Annotation of Text Streams with Structured Entities
K Q Pu, O Hassanzadeh, R Drake, R J Miller
Proceedings of the 19th ACM international conference on Information and knowledge management, pp. 29--38, 2010

BibBase Triplified
O Hassanzadeh, R S Xin, C Fritz, Y Yang, J Du, M Zhao, R J Miller
Proceedings of the 6th International Conference on Semantic Systems, pp. 41, 2010

Publishing Bibliographic Data on the Semantic Web using BibBase
Reynold S. Xin, Oktie Hassanzadeh, Christian Fritz, Shirin Sohrabi, Yang Yang, Jiang Du, Minghua Zhao, Ren\'ee J. Miller
Proceedings of the 9th International Semantic Web Conference (ISWC-10), Poster \& Demo Track, pp. 15--22, IOS Press, 2010

Temporal recommendation on graphs via long-and short-term preference fusion
L. Xiang, Q. Yuan, S. Zhao, L. Chen, X. Zhang, Q. Yang, J. Sun
Proceedings of the 16th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 723--732, 2010

Social action tracking via noise tolerant time-varying factor graphs
C Tan, J Tang, J Sun, Q Lin, F Wang
Proceedings of the 16th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 1049--1058, 2010

Facetatlas: Multifaceted visualization for rich text corpora
N Cao, J Sun, Y R Lin, D Gotz, S Liu, H Qu
Visualization and Computer Graphics, IEEE Transactions on 16(6), 1172--1181, IEEE, 2010

Moodcast: Emotion prediction via dynamic continuous factor graph model
Y Zhang, J Tang, J Sun, Y Chen, J Rao
Data Mining (ICDM), 2010 IEEE 10th International Conference on, pp. 1193--1198

Medical Case-based Retrieval by Leveraging Medical Ontology and Physician Feedback: UIUC-IBM at ImageCLEF 2010
P. Sondhi, J. Sun, C.X. Zhai, R. Sorrentino, M.S. Kohn, S. Ebadollahi, Y. Li
ImageCLEF, 2010

Preserving privacy of one-dimensional data streams by perturbing data with noise and using dynamic autocorrelation
Y C Chang, F Li, S Papadimitriou, G A Mihaila, I Stanoi, J Sun, S Y Philip, others
US Patent 7,840,516

PTM: probabilistic topic mapping model for mining parallel document collections
D Zhang, J Sun, C X Zhai, A Bose, N Anerousis
Proceedings of the 19th ACM international conference on Information and knowledge management, pp. 1653--1656, 2010

Community Evolution and Change Point Detection in Time-Evolving Graphs
J Sun, S Papadimitriou, P S Yu, C Faloutsos
Link Mining: Models, Algorithms, and Applications, 73--104, Springer, 2010

METHOD AND SYSTEM FOR TRANSFORMING XML DATA TO RDF DATA
H Y Li, S P Liu, J Mei, Y Ni, G T Xie
US Patent App. 12/787,494

Sales and operations planning in systems with order configuration uncertainty
C H Chen-Ritzo, T Ervolina, T P Harrison, B Gupta
European Journal of Operational Research 205(3), 604--614, Elsevier, 2010

Component rationing for available-to-promise scheduling in configure-to-order systems
C H Chen-Ritzo, T Ervolina, T P Harrison, B Gupta
European Journal of Operational Research, Elsevier, 2010

METHOD AND SYSTEM ENABLING DYNAMIC COMPOSITION OF HETEROGENOUS RISK MODELS
C V Apte, E W Cope, L A Deleris, S Kapoor, K P McAuliffe, B K Ray
US Patent App. 12/690,358

Real-time analysis for intensive care: development and deployment of the artemis analytic system
Marion Blount, Maria R Ebling, J MIKAEL Eklund, Andrew G James, Carolyn McGregor, Nathan Percival, Kathleen P Smith, Daby Sow
Engineering in Medicine and Biology Magazine, IEEE 29(2), 110--118, IEEE, 2010

On the integration of an artifact system and a real-time healthcare analytics system
M Blount, C McGregor, A James, D Sow, R Kamaleswaran, S Tuuha, J Percival, N Percival
Proceedings of the 1st ACM International Health Informatics Symposium, pp. 647--655, 2010

INFORMATION CONTENT DISTRIBUTION BASED ON PRIVACY AND/OR PERSONAL INFORMATION
C Bisdikian, N J Lee, M Nagshineh, V Perret, D M Sow, others
EP Patent 1,461,892

Body sensor data processing using stream computing
Daby M. Sow, Alain Biem, Marion Blount, Maria Ebling, Olivier Verscheure
Proceedings of the 11th ACM SIGMM International Conference on Multimedia Information Retrieval, MIR 2010, Philadelphia, Pennsylvania, USA, March 29-31, 2010, pp. 449--458

Systems and methods for building and implementing ontology-based information resources
Juan Fernando Arg\"uello, Youssef Drissi, Nicholas CM Fuller, Ijeoma M Nnebe, Daby M Sow
US Patent 7,739,218

Visual debugging for stream processing applications
Wim De Pauw, Mihai Lectia, Bugra Gedik, Henrique Andrade, Andy Frenkiel, Michael Pfeifer, Daby Sow
Proceedings of the First international conference on Runtime verification, pp. 18--35, Springer-Verlag, 2010

A Semantic Bayesian Network for Web Mashup Network Construction
C Zhou, H Chen, Z Peng, Y Ni, G Xie
Green Computing and Communications (GreenCom), 2010 IEEE/ACM Int'l Conference on \& Int'l Conference on Cyber, Physical and Social Computing (CPSCom), pp. 645--652

Ontology-Driven Mashup Auto-Completion on a Data API Network
C Zhou, H Chen, Z Peng, Y Ni, G Xie
Tsinghua Science \& Technology 15(6), 657--667, Elsevier, 2010

Protein interface conservation across structure space
Q C Zhang, D Petrey, R Norel, B H Honig
Proceedings of the National Academy of Sciences 107(24), 10896, National Acad Sciences, 2010

PUDGE: a flexible, interactive server for protein structure prediction
R Norel, D Petrey, B Honig
Nucleic acids research 38(suppl 2), W550--W554, Oxford Univ Press, 2010

Aggregation, Organization and Provision of Professional and Social Information
G.T. Lakshmanan, M. Oberhofer
US Patent App. 12/876,966

Integrating global aviation data with temporal and spatial weather information
L.I. Rusu, W. Rahayu, T. Torabi, F. Puersch, A.T. Harris, K. Reed
Australasian Transport Research Forum (ATRF 2010, pp. 1--18

Design of multispecific protein sequences using probabilistic graphical modeling
Menachem Fromer, Chen Yanover, Michal Linial
Proteins: Structure, Function, and Bioinformatics 78(3), 530--547, 2010

SPRINT: side-chain prediction inference toolbox for multistate protein design
Menachem Fromer, Chen Yanover, Amir Harel, Ori Shachar, Yair Weiss, Michal Linial
Bioinformatics 26(19), 2466--7, 2010

Inferring PDZ domain multi-mutant binding preferences from single-mutant data
Elena Zaslavsky, Philip Bradley, Chen Yanover
PLoS One 5(9), e12787, 2010

How do amino acid mismatches affect the outcome of hematopoietic cell transplants? A structural perspective
Chen Yanover, Mari Malkki, Ted Gooley, Effie Petersdorf, Stephen Spellman, Andrea Velardi, Peter Bardy, Alejandro Madrigal, Philip Bradley
Proceedings of the Immunoinformatics and Computational Immunology Workshop, ACM International Conference on Bioinformatics and Computational Biology, pp. 627--633, ACM, 2010

Object relevance weight pattern mining for activity recognition and segmentation
P. Palmes, H.K. Pung, T. Gu, W. Xue, S. Chen
Pervasive and Mobile Computing 6(1), 43--57, Elsevier, 2010

Pattern Mining of Multichannel sEMG for Tremor Classification
P. Palmes, W.T. Ang, F. Widjaja, L.C.S. Tan, W.L. Au
Biomedical Engineering, IEEE Transactions on 57(12), 2795--2805, IEEE, 2010

Improving Disease Surveillance Capabilities for a Public Health Information Affinity Domain
Armando Ahued, Jorge Morales, Sondra Renly, Stefan Edlund, James Kaufman
ACM International Health Informatics Symposium, 2010

Tribological Effects on DNA Translocation in a Nanochannel Coated with a Self-Assembled Monolayer
B. Luan, A. Afzali-Ardakani, S. Harrer, H. Peng, P. Waggoner, S. Polonsky, G. Stolovitzky, G. Martyna
J. Phys. Chem. B, 2010

Press coverage: DNA-Transistor project featured in Scientific American (December 2010 issue): "10 World Changing Ideas: Innovations for a Brighter Future" (cover page and page 46)
Elizabeth Svoboda
Scientific American, 2010

Method and apparatus for the dynamic introduction of new attributes into policies
D.M. Chess, M.V. Devarakonda, A. Segal, I.N. Whalley, others
US Patent 7,788,362

Modularity and directionality in genetic interaction maps
A. Jaimovich, R. Rinott, M. Schuldiner, H. Margalit, N. Friedman
Bioinformatics 26(12), i228--i236, Oxford Univ Press, 2010

POLICY-BASED COMPUTER FILE MANAGEMENT BASED ON CONTENT-BASED ANALYTICS
Karen W Brannon, Sangeeta T Doraiswamy
US Patent App. 12/842,780

Automatic left ventricle segmentation using iterative thresholding and an active contour model with adaptation on short-axis cardiac MRI
H.Y. Lee, N.C.F. Codella, M.D. Cham, J.W. Weinsaft, Y. Wang
Biomedical Engineering, IEEE Transactions on 57(4), 905--913, IEEE, 2010

Respiratory and cardiac self-gated free-breathing cardiac CINE imaging with multiecho 3D hybrid radial SSFP acquisition
J. Liu, P. Spincemaille, N.C.F. Codella, T.D. Nguyen, M.R. Prince, Y. Wang
Magnetic Resonance in Medicine 63(5), 1230--1237, Wiley Online Library, 2010

Rapid and accurate left ventricular chamber quantification using a novel CMR segmentation algorithm: a clinical validation study
N.C.F. Codella, M.D. Cham, R. Wong, C. Chu, J.K. Min, M.R. Prince, Y. Wang, J.W. Weinsaft
Journal of Magnetic Resonance Imaging 31(4), 845--853, Wiley Online Library, 2010

Impact of diastolic dysfunction severity on global left ventricular volumetric filling-assessment by automated segmentation of routine cine cardiovascular magnetic resonance
D.D. Mendoza, N.C.F. Codella, Y. Wang, M.R. Prince, S. Sethi, S.J. Manoushagian, K. Kawaji, J.K. Min, T.M. LaBounty, R.B. Devereux, others
Journal of Cardiovascular Magnetic Resonance 12(1), 46, BioMed Central, 2010


Automated segmentation of routine cine-CMR for volumetric assessment of presence and severity of left ventricular diastolic dysfunction
D.D. Mendoza, N.C.F. Codella, S. Sethi, K. Kawaji, S. Manoushagian, M.R. Prince, R.B. Devereux, J.K. Min, M.D. Cham, Y. Wang, others
Journal of Cardiovascular Magnetic Resonance12, 1--2, Springer, 2010

Cortically-Coupled Computer Vision
P. Sajda and E. Pohlmeyer and J. Wang and B. Hanna and L. C. Parra and S.-F. Chang
Brain-Computer Interfaces: Applying our Minds to Human-Computer Interaction, Elsevier, 2010
Abstract

Sequential Projection Learning for Hashing with Compact Codes,
J. Wang, S. Kumar and S.-F. Chang
The 27th International Conference on Machine Learning, 2010

Semi-supervised Hashing for Scalable Image Retrieval
J. Wang and S. Kumar and S.-F. Chang
IEEE Int. Conf. on Computer Vision and Pattern Recognition, 2010

In a Blink of an Eye and a Switch of a transistor: Cortically Coupled Computer Vision
P. Sajd, E. Pohlmeyer, J. Wang, L. C. Parra, C. Christoforou, J. Dmochowski, B. Hanna, C. Bahlmann, M. K. Singh, S.-F. Chang
Proceedings of the IEEE 98(3), 462-478, 2010

Rapid Image Annotation via Brain State Decoding and Visual Pattern Mining
S.-F. Chang, J. Wang, P. Sajda, E. Pohlmeyer, B. Hanna
International Patent APP.PCT/US2010/023494

Prognostic data-driven clinical decision support-formulation and implications.
Ruty Rinott, Boaz Carmeli, Carmel Kent, Daphna Landau, Yonatan Maman, Yoav Rubin, Noam Slonim
Studies in health technology and informatics169, 140--144, 2010

Feature-Rich Information Extraction for the Technical Trend-Map Creation
Risa Nishiyama, Yuta Tsuboi, Yuya Unno, Hironori Takeuchi
Proceedings of the 8th NTCIR Workshop Meeting, pp. 318--324, 2010

Statistical outlier detection using direct density ratio estimation
Shohei Hido, Yuta Tsuboi, Hisashi Kashima, Masashi Sugiyama and Takafumi Kanamori
Knowledge and Information Systems, 2010


COLLABORATIVE FILTERING ON SPARE DATASETS WITH MATRIX FACTORIZATIONS
S.S. Bucak, J. Hu, A. Mosjilovic, V. Sindhwani
US Patent App. 12/848,602

Preserving privacy of one-dimensional data streams using dynamic correlations
Y.C. Chang, F. Li, S. Papadimitriou, G.A. Mihaila, I. Stanoi, J. Sun, S.Y. Philip, others
US Patent 7,853,545

Multi-Faceted Visualization of Rich Text Corpora
N. Cao, D.H. Gotz, J. Sun
US Patent App. 12/872,794

Electrochemical Characterization of Thin Film Electrodes Toward Developing a DNA Transistor
S. Harrer, S. Ahmed, A. Afzali-Ardakani, B. Luan, P. S. Waggoner, X. Shao, H. Peng, D. L. Goldfarb, G. J Martyna, S. M. Rossnagel, L. Deligianni, G. A. Stolovitzky
Langmuir 26(24), 153103--153103, ACS Publications, 2010

Tribological Effects on DNA Translocation in a Nanochannel Coated with a Self-Assembled Monolayer
Binquan Luan, Ali Afzali, Stefan Harrer, Hongbo Peng, Philip Waggoner, Stas Polonsky, Gustavo Stolovitzky, Glenn Martyna
The Journal of Physical Chemistry B 114(51), 17172 17176, ACS Publications, 2010
Abstract

Use DB2 pureXML to implement a healthcare industry data solution
A. Shabo, M. Desisto, A. Burla, Y.Maman
IBM developersWork, 2010

Large scale healthcare data integration and analysis using the semantic web.
John Timm, Sondra Renly, Ariel Farkash
Studies in health technology and informatics169, 729--733, 2010

METHODS AND SYSTEMS FOR ANNOTATING BIOMOLECULAR SEQUENCES
Alex Diber, Sarah Pollock, Zurit Levine, Sergey Nemzer, Vladimir Grebinskiy, Brian Meloon, Andrew Olson, Avi Rosenberg, Ami Haviv, Shaul Zevin, others
US Patent App. 12/701,651

A model-driven approach for biomedical data integration.
D. Carlson, A. Farkash, JT Timm
Studies in health technology and informatics 160(Pt 2), 1164, 2010

Nucleotide and amino acid sequences, and assays and methods of use thereof for diagnosis
Michal Ayalon-Soffer, Sarah Pollock, Ronen Shemesh, Rotem Sorek, Zurit Levine, Zipi Shaqed, Amir Toporik, Gad S Cojocaru, Dvir Dahary, Guy Kol, others
US Patent 7,842,459

Predicting Outcomes of a Content Driven Process Instance Execution
S. Duan, P.T. Keyser, R.Y. Khalaf, G.T. Lakshmanan, D. Shamsi
US Patent App. 12/910,573

Radon-like features and their application to connectomics
R. Kumar, A. V\'azquez-Reina, H. Pfister
Computer Vision and Pattern Recognition Workshops (CVPRW), 2010 IEEE Computer Society Conference on, pp. 186--193

Morphable Reflectance Fields for enhancing face recognition
R. Kumar, M. Jones, T.K. Marks
Computer Vision and Pattern Recognition (CVPR), 2010 IEEE Conference on, pp. 2606--2613

Eigenbubbles: An Enhanced Apparent BRDF Representation
R. Kumar, B.C. Vemuri, A. Banerjee
Proceedings of the 2010 20th International Conference on Pattern Recognition, pp. 1686--1689

Service operation classification for risk management
F Shafti, T Bedford, L A Deleris, J R M Hosking, N Serban, H Shen, L Walls
IBM Journal of Research and Development 54(3), 7:1-7:17, IBM, 2010

Business Integrity and Risk Management
B. Ray, K. McAuliffe, J. von Kaenel, EW Cope, LA Deleris, N. Nayak, RG Torok, D. Hubbard, D. Evans, SN Foley,
IBM Journal of Research and Development 54(3), 1-2, 2010

Building Watson: An overview of the DeepQA project
D. Ferrucci, E. Brown, J. Chu-Carroll, J. Fan, D. Gondek, A.A. Kalyanpur, A. Lally, J.W. Murdock, E. Nyberg, J. Prager, others
AI Magazine 31(3), 59--79, American Association for Artificial Intelligence, 2010

Similarity retrieval of cardiac reports
Tanveer Syeda-Mahmood
Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE, pp. 1135--1141

Medical Content-Based Retrieval for Clinical Decision Support: First MICCAI International Workshop, MCBR-CBS 2009, London, UK, September 20, 2009. Revised Selected Papers
Barbara Caputo, Henning M\"uller, Tanveer Syeda-Mahmood, James Duncan, Fei Wang, Jayashree Kalpathy-Cramer
Mahmood, J Duncan... - 2010 - books.google.com, Springer

Overview of the first workshop on medical content--based retrieval for clinical decision support at MICCAI 2009
Henning M\"uller, Jayashree Kalpathy--Cramer, Barbara Caputo, Tanveer Syeda-Mahmood, Fei Wang
Medical Content-Based Retrieval for Clinical Decision Support, pp. 1--17, Springer Berlin Heidelberg, 2010

Coronary artery segmentation using geometric moments based tracking and snake-driven refinement
Kun Chen, Yong Zhang, Kilian Pohl, Tanveer Syeda-Mahmood, Zhihuan Song, Stephen TC Wong
Engineering in Medicine and Biology Society (EMBC), 2010 Annual International Conference of the IEEE, pp. 3133--3137

An Integrative, Anonymity-Preserving Framework for Disseminating Patient Records
G. Loukides, A. Gkoulalas-Divanis, B. Malin
Database Technology for Life Sciences and Medicine, World Scientific Publishing, 2010

Privacy Issues in Spatiotemporal Data Mining
A. Gkoulalas-Divanis, V.S. Verykios
Privacy-Aware Knowledge Discovery: Novel Applications and New Techniques, Chapman & Hall / CRC Press, 2010

Privacy Preservation in Trajectories of Moving Objects
V.S. Verykios, A. Gkoulalas-Divanis, Y. Theodoridis, N. Pelekis
Privacy Preservation on Computer and Communication Technologies: Technical and Legal Issues, Papasotiriou, 2010

Base-by-base ratcheting of single-stranded DNA through a solid-state nanopore: the DNA Transistor
H. Peng, B. Luan, S. Harrer, S. Polonsky, S. M. Rossnagel, G. J. Martyna, G. A. Stolovitzky
Abstracts of Papers of the American Chemical Society, vol. 240, 2010

hsa-miR-29c* is linked to the prognosis of malignant pleural mesothelioma
Harvey I Pass, Chandra Goparaju, Sergey Ivanov, Jessica Donington, Michele Carbone, Moshe Hoshen, Dalia Cohen, Ayelet Chajut, Shai Rosenwald, Harel Dan, others
Cancer research 70(5), 1916--1924, AACR, 2010

Validation of a microRNA-based qRT-PCR test for accurate identification of tumor tissue origin
Shai Rosenwald, Shlomit Gilad, Sima Benjamin, Danit Lebanony, Nir Dromi, Alexander Faerman, Hila Benjamin, Ronen Tamir, Meital Ezagouri, Eran Goren, others
Modern Pathology 23(6), 814--823, Nature Publishing Group, 2010

A diagnostic assay based on microRNA expression accurately identifies malignant pleural mesothelioma
Hila Benjamin, Danit Lebanony, Shai Rosenwald, Lahav Cohen, Hadas Gibori, Naama Barabash, Karin Ashkenazi, Eran Goren, Eti Meiri, Sara Morgenstern, others
The Journal of Molecular Diagnostics 12(6), 771--779, Elsevier, 2010

A second-generation microRNA-based assay for diagnosing tumor tissue origin
Ranit Aharonov, Ayelet Chajut, Yael Spector, Shai Rosenwald, Tina B Edmonston, Iris Barshack, Meora Feinmesser, Monica Huszar, Wolf Mueller, Franz Fogt, others
Proceedings of the American Association for Cancer Research 2010(1\_Molecular\_Diagnostics\_Meeti), A28, AlphaMed Press

Prostate cancer-related nucleic acids
Itzhak Bentwich, Amir Avniel, Yael Karov, Ranit Aharonov
US Patent 7,642,348

Micrornas and uses thereof
Itzhak Bentwich, Amir Avniel, Yael Karov, Ranit Aharonov
US Patent App. 12/661,041

Viral and viral associated miRNAs and uses thereof
Itzhak Bentwich, Amir Avniel, Yael Karov, Ranit Aharonov
US Patent 7,795,419

Lung cancer-related nucleic acids
Bentwich Itzhak, Amir Avniel, Yael Karov, Ranit Aharonov
US Patent 7,825,229

microRNAs as clinical biomarkers for lung cancer classification
Tina B Edmonston, Michal Kushnir, Ranit Aharonov, Gila Lithwick Yanai, Hila Benjamin, Marluce Bibbo, Craig Thurm, Laurie Horowitz, Yajue Huang, Shlomit Gilad, others
Proceedings of the American Association for Cancer Research 2010(1\_Molecular\_Diagnostics\_Meeti), B8

COMPOSITIONS AND METHODS FOR THE PROGNOSIS OF LYMPHOMA
Moshe HOSHEN, Gila LITHWICK YANAI, Meir LAHAV, Ranit AHARONOV, others
WO Patent 2,010,018,563

MicroRNAs as a potential prognostic factor in gastric cancer.
O Purim, M Hoshen, G Marshak, Y Kundel, S Morgenstern, M Halpern, R Aharonov, Y Niv, M Kushnir, B Brenner
J Clin Oncol (Meeting Abstracts) 28(15\_suppl), 10635, 2010

Finding beautiful insights in the chaos of social network visualizations
Adam Perer
Beautiful Visualization, 157--173, O'Reilly Media, Inc., 2010

Automatic Selection of Keyframes from Angiogram Videos.
Tanveer Fathima Syeda-Mahmood, David Beymer, Fei Wang, A Mahmood, Robert J Lundstrom, N Shafee, T Holve
ICPR, pp. 4008--4011, 2010

Neural Networks Application on Emergency Department Load Measurement
Edward Vitkin, Boaz Carmeli, Ohad Greenshpan, Dorit Baras, Yariv Marmor
Proceedings of the International Symposium on Stochastic Models in Reliability Engineering, Life Sciences and Operations Management, SMRLO10, pp. 8--11, 2010

MEDAL: Measuring of Emergency Departments Adaptive Load
E Vitkin, B Carmeli, O Greenshpan, D Baras, Y Marmor
Proceedings of the 13th World Congress on Medical and Health Informatics, MEDINFO 2010, pp. 12--15

2009 Service Science and Service Innovation Awards: SRII: Service Research \& Innovation Initiative
Segev Wasserkrug, Avishai Mandelbaum, Yariv Marmor, Avi Shtub, Daniel Gopher, Yael Auerback-Shpak, Dagan Schwartz, Fuad Basis, Jacob Assaf, Boaz Carmeli, others
Journal of Service Research 13(2), 136, 2010

Nuclear origins of cell-to-cell variability
Z Waks, PA Silver
Cold Spring Harbor symposia on quantitative biology, pp. 87--94, 2010

Localized fusion of Shape and Appearance features for 3D Human Pose Estimation.
Suman Sedai, Mohammed Bennamoun, Du Q Huynh, Perth Crawley
BMVC, pp. 1--10, 2010

Mobile Phones for Health Education in the Developing World: SMS as a User Interface
Danis, C., Ellis, J.B., Kellogg, W.A., van Beijma, H., Hoefman, B., Daniels, S. D., Loggers, J-W
ACM Dev 2010, First Annual Symposium on Computing for Development, pp. 13

Privacy-preserving method for skimming of data from a collaborative infrastructure
Catalina M Danis, Thomas D Erickson, Mary E Helander, Wendy A Kellogg, Rhonda Rosenbaum, David S Singer, Calvin B Swart
US Patent App. 12/723,193

Blocking Schemes
Aris Gkoulalas-Divanis, Vassilios S Verykios
Association Rule Hiding for Data Mining, pp. 35--36, Springer, 2010

An integrative framework for anonymizing clinical and genomic data
Grigorios Loukides, Aris Gkoulalas-Divanis, Bradley Malin
Database technology for life sciences and medicine, pp. 65--89, World Scientific, 2010

Rigid shape matching by segmentation averaging
Hongzhi Wang, John Oliensis
Pattern Analysis and Machine Intelligence, IEEE Transactions on 32(4), 619--635, IEEE, 2010

Survivor buddy and scigirls: Affect, outreach, and questions
Robin Murphy, Vasant Srinivasan, Negar Rashidi, Brittany Duncan, Aaron Rice, Zachary Henkel, Marco Garza, Clifford Nass, Victoria Groom, Takis Zourntos, others
Proceedings of the 5th ACM/IEEE international conference on Human-robot interaction, pp. 127--128, 2010

Motion control of omni-directional three-wheel robots by brain-emotional-learning-based intelligent controller
Maziar A Sharbafi, Caro Lucas, Roozbeh Daneshvar
Systems, Man, and Cybernetics, Part C: Applications and Reviews, IEEE Transactions on 40(6), 630--638, IEEE, 2010

Two-Phase Iterative Algorithm
Aris Gkoulalas-Divanis, Vassilios S Verykios
Association Rule Hiding for Data Mining, pp. 83--92, Springer, 2010

2nd IEEE International Workshop on Privacy Aspects of Data Mining (PADM 2010)
Aris Gkoulalas--Divanis, Kun Liu, Vassilios S Verykios, Ran Wolff
IEEE ICDM 2010

Proceedings of the 1st International ECML/PKDD Workshop on Privacy and Security Issues in Data Mining and Machine Learning (PSDML 2010)
Christos Dimitrakakis, Aris Gkoulalas-Divanis, Aikaterini Mitrokotsa, Vassilios S Verykios, Y\"ucel Saygin
Divanis, A Mitrokotsa... - 2010 - publications.lib.chalmers.se, Springer-Verlag

Inline Algorithm
Aris Gkoulalas-Divanis, Vassilios S Verykios
Association Rule Hiding for Data Mining, pp. 71--82, Springer, 2010

Distortion Schemes
Aris Gkoulalas-Divanis, Vassilios S Verykios
Association Rule Hiding for Data Mining, pp. 29--33, Springer, 2010

Extracting Problem and Resolution Information from Online Discussion Forums.
Preethi Raghavan, Rose Catherine, Shajith Ikbal, Nanda Kambhatla, Debapriyo Majumdar
COMAD, pp. 77, 2010

Classification of mailing lists and forum posts
Preethi Raghavan, K Rose Catherine, Shajith Ikbal, Nanda Kambhatla
FIRE, 2010

Stereo matching with mumford-shah regularization and occlusion handling
Rami Ben-Ari, Nir Sochen
IEEE Transactions on Pattern Analysis and Machine Intelligence 32(11), 2071--2084, 2010

Method and system of configuring elements of a distributed computing system for optimized value
Edward P Clarke Jr, Lorraine M Herger, Marrcel-Catalin Rosu, Frank A Schaffa, Edith H Stern
US Patent 7,720,968

Multitier ASP services delivery for wireless devices
Victor S Moore, Edith H Stern, Barry E Willner
US Patent 7,647,021

Rapid business support of insured property using image analysis
Chitra Dorai, William F Jerome, Edith H Stern, Fred S Winegust
US Patent 7,809,587

Adaptive searching
Edith Helen Stern, Patrick Joseph O'sullivan, Robert Cameron Weir, Barry E Willner
US Patent 7,797,314

Creation and persistence of action metadata
Edith H Stern, John J Thomas, Robert C Weir, Barry E Willner
US Patent 7,797,335

Context-informed summarization
Edith Helen Stern, Liam Harpur, Patrick Joseph O'sullivan, Barry E Willner
US Patent App. 12/955,423


Operations research improves sales force productivity at IBM
Rick Lawrence, Claudia Perlich, Saharon Rosset, Ildar Khabibrakhmanov, Shilpa Mahatma, Sholom Weiss, Matt Callahan, Matt Collins, Alexey Ershov, Shiva Kumar
Interfaces 40(1), 33--46, INFORMS, 2010


Spatial-Temporal Optimization of Physical Asset Maintenance
Arun Hampapur, Hongfei LI, Andrew J Davenport, Shilpa Mahatma, Lexing Xie, Rogerio S Feris, Wei Shan Dong, Zhong Bo Jiang, Hao Wang, Jing Xiao, others
US Patent App. 12/874,979

Causal modeling of multi-dimensional hierachical metric cubes
Naoki Abe, Jing Fu, Michael G Gemmell, Shubir Kapoor, Floyd S Kelly, David M Loehr, Aurelie C Lozano, Shilpa N Mahatma, Bonnie K Ray
US Patent App. 12/943,316

iOpener Workbench: Tools for rapid understanding of scientific literature
Cody Dunne, Ben Shneiderman, Bonnie Dorr, Judith Klavans
Human-Computer Interaction Lab 27th Annual Symposium, University of Maryland, College Park, MD, 2010

Free-shape subwindow search for object localization
Zhiqi Zhang, Yu Cao, Dhaval Salvi, Kenton Oliver, Jarrell Waggoner, Song Wang
Computer Vision and Pattern Recognition (CVPR), 2010 IEEE Conference on, pp. 1086--1093

Stethoscope disinfection device
Dean Nahman, Amos Cahan
US Patent App. 13/320,109

High-throughput detection of prostate cancer in histological sections using probabilistic pairwise Markov models
James P Monaco, John E Tomaszewski, Michael D Feldman, Ian Hagemann, Mehdi Moradi, Parvin Mousavi, Alexander Boag, Chris Davidson, Purang Abolmaesumi, Anant Madabhushi
Medical image analysis 14(4), 617--629, Elsevier, 2010

Tissue typing using ultrasound RF time series: Experiments with animal tissue samples
Mehdi Moradi, Purang Abolmaesumi, Parvin Mousavi
Medical physics 37(8), 4401--4413, American Association of Physicists in Medicine, 2010

Prostate brachytherapy seed reconstruction using c-arm rotation measurement and motion compensation
Ehsan Dehghan, Junghoon Lee, Mehdi Moradi, Xu Wen, Gabor Fichtinger, Septimiu Salcudean
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2010, 283--290, Springer

Automatic prostate segmentation using fused ultrasound B-mode and elastography images
S Sara Mahdavi, Mehdi Moradi, William J Morris, Septimiu E Salcudean
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2010, pp. 76--83, Springer


Nearly automatic segmentation of hippocampal subfields in< i> in vivo focal T2-weighted MRI
Paul A Yushkevich, Hongzhi Wang, John Pluta, Sandhitsu R Das, Caryne Craige, Brian B Avants, Michael W Weiner, Susanne Mueller
Neuroimage 53(4), 1208--1224, Elsevier, 2010

Automatic cardiac MRI segmentation using a biventricular deformable medial model
Hui Sun, Alejandro F Frangi, Hongzhi Wang, Federico M Sukno, Catalina Tobon-Gomez, Paul A Yushkevich
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2010, pp. 468--475, Springer

Standing on the shoulders of giants: improving medical image segmentation via bias correction
Hongzhi Wang, Sandhitsu Das, John Pluta, Caryne Craige, Murat Altinay, Brian Avants, Michael Weiner, Susanne Mueller, Paul Yushkevich
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2010, pp. 105--112, Springer

Shape-based semi-automatic hippocampal subfield segmentation with learning-based bias removal
Hongzhi Wang, Sandhitsu R Das, John Pluta, Caryne Craige, Murat Altinay, Michael Weiner, Susanne Mueller, Paul A Yushkevich
Biomedical Imaging: From Nano to Macro, 2010 IEEE International Symposium on, pp. 424--427

Leveraging natural language processing of clinical narratives for phenotype modeling
Preethi Raghavan, Albert M Lai
Proceedings of the 3rd workshop on Ph. D. students in information and knowledge management, pp. 57--66, 2010

Gene Expression Classification with a novel coevolutionary based learning classifier system on Public Clouds
C Vecchiola, M Abedini, M Kirley, X Chu, R Buyya
e-Science Workshops, 2010 Sixth IEEE International Conference on, pp. 92--97

A multiple population XCS: Evolving condition-action rules based on feature space partitions
M Abedini, M Kirleymkirley
Evolutionary Computation (CEC), 2010 IEEE Congress on, pp. 1--8

Multiplexed biomarkers of insulin resistance
T Wang, O Shaham, R Gerszten, V K Mootha, V S Ramachandran, M Larson
WO Patent WO/2010/005,982

A plasma signature of human mitochondrial disease revealed through metabolic profiling of spent media from cultured muscle cells
Shaham O, Slate NG, Goldberger O, Xu Q, Ramanathan A, Souza AL, Clish CB, Sims KB, Mootha VK
Proceedings of the National Academy of Sciences 107(4), 1571, National Acadamey of Sciences U S A, 2010
Abstract

High-Performance Signal Detection for Adverse Drug Events using MapReduce Paradigm
K Fan, X Sun, Y Tao, L Xu, C Wang, X Mao, B Peng, Y Pan
AMIA Annual Symposium Proceedings, pp. 902, 2010

Improving Disease Survelliance Capabilities through a Public Health Information Affinity Domain
Ahued, J, Morales, J., Renly, S., Edlund, S., Kaufman, J.
1st ACM International Health Informatics Symposium, 2010

Cloud-based platform for personalization in a wellness management ecosystem: Why, what, and how
P Y S Hsueh, R J R Lin, M J H Hsiao, L Zeng, S Ramakrishnan, H Chang
Collaborative Computing: Networking, Applications and Worksharing (CollaborateCom), 2010 6th International Conference on, pp. 1--8

DiscoveryLink: A system for integrated access to life sciences data sources
L M Haas, P M Schwarz, P Kodali, E Kotlar, J E Rice, W C Swope
IBM systems Journal 40(2), 489--511, IBM, 2010

A Smarter Platform for Health Care Solution over Next Generation Network.
Chen R., Hsiao, M., Hsueh, P., and Zeng, L.
IBM GCG Technical Conference, 2010

Cloud-based Platform for Personalization in a Wellness Management Ecosystem: Why, What, and How
Pei-Yun S. Hsueh, Raymund J.R. Lin, Mark J.H. Hsiao, Liangzhao Zeng, Sreeram Ramakrishnan, and Henry Chang
6th International Conference on Collaborative Computing: Networking, Applications and Worksharing, Create-Net, the Institute for Computer Sciences, and Social Informatics and Telecommunications Engineering (ICST), and IEEE Computer Society , 2010

GreenOlive: An open platform for wellness management ecosystem
L Zeng, P Y Hsueh, H Chang, C Chung, R Huang
Service Operations and Logistics and Informatics (SOLI), 2010 IEEE International Conference on, pp. 88--93

Privacy-Preserving Publication of Diagnosis Codes for Effective Biomedical Analysis
G Loukides, A Gkoulalas-Divanis, B Malin
10th IEEE International Conference on Information Technology and Applications in Biomedicine, pp. 1--6, 2010

Medical Content-Based Retrieval for Clinical Decision Support
Tanveer Syeda-Mahmood, James Duncan, Fei Wang, Jayashree Kalpathy-Cramer
Springer-Verlag Berlin Heidelberg, 2010

Automatic selection of keyframes from angiogram videos
T Syeda-Mahmood, D Beymer, F Wang, A Mahmood, RJ Lundstrom, N Shafee, T Holve
Pattern Recognition (ICPR), 2010 20th International Conference on, pp. 4008--4011

Association Rule Hiding for Data Mining
A Gkoulalas-Divanis, V S Verykios
Divanis... - 2010 - books.google.com, Springer

From Itemsets Through Trajectories to Location Based Services: A Knowledge Hiding Privacy Approach
A Gkoulalas-Divanis
SIGKDD Explorations 11(2), 61--62, ACM, 2010

Anonymization of Electronic Medical Records for Validating Genome-Wide Association Studies
G Loukides, A Gkoulalas-Divanis, B Malin
Proceedings of the National Academy of Sciences 107(17), 7898, National Acad Sciences, 2010

Revealing strengths and weaknesses of methods for gene network inference
D Marbach, R J Prill, T Schaffter, C Mattiussi, D Floreano, G Stolovitzky
Proc Natl Acad Sci U S A 107(14), 6286, 2010

Towards a rigorous assessment of systems biology models: The DREAM3 challenges
R J Prill, D Marbach, J Saez-Rodriguez, P K Sorger, L G Alexopoulos, X Xue, N D Clarke, G Altan-Bonnet, G Stolovitzky
PLoS ONE 5(2), e9202, Public Library of Science, 2010


2009

Microscopic cell segmentation and dead cell detection based on cfse and pi images by using distance and watershed transforms
Eric Dahai Cheng, Subhash Challa, Rajib Chakravorty
Digital Image Computing: Techniques and Applications, 2009. DICTA'09., pp. 32--39



Authenticity and Provenance in Long Term Digital Preservation: Modeling and Implementation in Preservation Aware Storage
M Factor, E Henis, D Naor, S Rabinovici-Cohen, P Reshef, S Ronen, G Michetti, M Guercio
Proceedings of the USENIX First Workshop on the Theory and Practice of Provenance (TaPP), February 23, 2009, San Francisco, USA

Biomedical information integration middleware for clinical genomics
S Rabinovici-Cohen
Next Generation Information Technologies and Systems (NGITS) 2009, Lecture Notes in Computer Science (LNCS) 5831 Springer 2009, pages 13-25, pp. 13-25



Mean field variational approximation for continuous-time Bayesian networks
I Cohn, T El-Hay, N Friedman, R Kupferman
Proceedings of the Twenty-Fifth Conference on Uncertainty in Artificial Intelligence, pp. 91--100, 2009



Distal Tumors Elicit Distinctive Gene Expression Changes in Mouse Brain, Different from Those Induced by Arthritis
M J Alvarez, M C Salibe, G Stolovitzky, M Rubinstein, F J Pitossi, O L Podhajcer
Open Neuroscience Journal3, 13--25, 2009

A spatiotemporal model for influenza
Edlund S, Bromberg M, Chodick G, Douglas J, Ford D, Kaufman Z, Lessler J, Marom R, Mesika Y, Ram R, Shalev V, Kaufman J.
HIC 2009, Frontiers of Health Informatics,

Infectious disease modeling: creating a community to respond to biological threats.
Kaufman J, Edlund S, Douglas J.
Statistical Communications in Infectious Diseases 1(1), The Berkeley Electronic Press, 2009

Temporal and spatial effects of lunar calendar holidays on influenza A transmission in Israel.
Kaufman J, Edlund S, Bromberg M, Chodick G, Lessler J, Mesika Yossi, Ram R, Douglas J, Kaufman Z, Levanthal A, Marom R, Shalev V.
Epidemics 2, 2009

Development and Utilization of a Spatial and Temporal Modeling System to Investigate Disease Outbreaks in Vermont
Charles L. Hulse, Joanna L. Conant, James H. Kaufman, Stefan B. Edlund, Daniel A. Ford
PHIN, 2009

Randomization methods for assessing data analysis results on real-valued matrices
M Ojala, N Vuokko, A Kallio, N Haiminen, H Mannila
Statistical Analysis and Data Mining 2(4), 209-230, Wiley Online Library, 2009



Enabling Tailored Therapeutics with Linked Data
A Jentzsch, O Hassanzadeh, C Bizer, B Andersson, S Stephens
Proceedings of the 2nd Workshop on Linked Data on the Web (LDOW2009)

Linking Open Drug Data
A Jentzsch, J Zhao, O Hassanzadeh, K H Cheung, M Samwald, B Andersson
Proceedings of the Second Triplification Challenge 2009, Graz, Austria

A Declarative Framework for Semantic Link Discovery over Relational Data
O Hassanzadeh, L Lim, A Kementsietsidis, M Wang
Proceedings of the 18th International Conference on World wide web, pp. 1101--1102, ACM, 2009

Framework for Evaluating Clustering Algorithms in Duplicate Detection
O Hassanzadeh, F Chiang, H C Lee, R J Miller
Proceedings of the VLDB Endowment 2(1), 1282--1293, VLDB Endowment, 2009

Creating Probabilistic Databases from Duplicated Data
O. Hassanzadeh, R. J. Miller
The VLDB Journal 18(5), 1141--1166, Springer-Verlag New York, Inc., 2009

LinkedCT: A Linked Data Space for Clinical Trials
O Hassanzadeh, A Kementsietsidis, L Lim, R J Miller, M Wang
Arxiv preprint arXiv:0908.0567, 2009

Linkage Query Writer
O Hassanzadeh, R Xin, R J Miller, A Kementsietsidis, L Lim, M Wang
Proceedings of the 35th International Conference on Very Large Data Bases (VLDB 2009)-Demonstrations Track, pp. 1590--1593, VLDB Endowment

Linking Open Drug Data
A Jentzsch, J Zhao, O Hassanzadeh, KH Cheung, M Samwald, B Andersson
I-Semantics, 2009

Semantic Link Discovery
O. Hassanzadeh, A. Kementsietsidis, L. Lim, M. Wang
US Patent App. 12/609,657


Semantic-Aware Record Matching
O. Hassanzadeh, A. Kementsietsidis, L. Lim, M. Wang

Social influence analysis in large-scale networks
J Tang, J Sun, C Wang, Z Yang
Proceedings of the 15th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 807--816, 2009

MetaFac: Community Discovery via Relational Hypergraph Factorization
Y R L J Sun, P Castro, R Konuru, H Sundaram, A Kelliher
KDD, pp. 527--536, 2009

Smallblue: Social network analysis for expertise search and collective intelligence
C Y Lin, N Cao, S X Liu, S Papadimitriou, J Sun, X Yan
Data Engineering, 2009, pp. 1483--1486

HiMap: Adaptive Visualization of Large-Scale Online Social Networks
Lei Shi, Nan Cao, Shixia Liu, Li Tan, Jimeng Sun and Ching-Yung Lin
PacificVis 2009, pp. 41--48, IEEE

Multivis: Content-based social network exploration through multi-way visual analysis
J Sun, S Papadimitriou, C Y Lin, N Cao, S Liu, W Qian
Proc, pp. 1063--1074, 2009

Extracting community structure through relational hypergraphs
Y R Lin, J Sun, P Castro, R Konuru, H Sundaram, A Kelliher
Proceedings of the 18th international conference on World wide web, pp. 1213--1214, ACM, 2009


System and Method for Automatically Generating Adaptive Interaction Logs from Customer Interaction Text
Roy J, Byrd, Youngja Park, Mary Neff, Wilfried Teiken and Stephen C. Gates
US Patent App. 12/428,947

Social Mobile Augmented Reality for Retail
Sinem Guven, Ohan Oda, Mark Podlaseck, Harry Stavropoulos, Sai Kolluri, Gopal Pingali
IEEE International Conference on Pervasive Computing and Communications (PerCom), pp. 1--3, 2009


Enabling Community Participation for Workflows through Extensibility and Sharing
R. Khalaf, R. Subramanian, T. Mikalsen, M. Duftler, J. Diament, I. Silva-Lepe
Workshop on Business Process Management and Social Software (BPMS2 09), at BPM 2009, Springer LNBIP

STATISTICAL QUALITY MONITORING AND ENHANCEMENT
E Aharoni, H Neuvirth-Telem, S Rosset
US Patent App. 12/639,005

SYSTEM AND METHOD FOR CREATING AND EXPRESSING RISK-EXTENDED BUSINESS PROCESS MODELS
E W Cope, L Deleris, D Etzweiler, J Koehler, J M Kuester, B K Ray
US Patent App. 12/354,481

SYSTEM AND METHOD FOR DISTRIBUTED ELICITATION AND AGGREGATION OF RISK INFORMATION
Debarun Bhattacharjya, Lea A Deleris, Andre Elisseeff, Shubir Kapoor, Eleni Pratsini, Bonnie K Ray, Wititchai Sachchamarga
US Patent App. 12/640,082

Methods and apparatus for functional model-based data provenance in stream processing environments
Lisa Amini, Marion Lee Blount, II John Sidney Davis, Wim De Pauw, Archan Misra, Daby Mousse Sow, Chitra Venkatramani, Min Wang, others
US Patent 7,539,753

Offering Increased Privacy Guarantees in Continuous Location Based Services
D. Douras, A. Gkoulalas-Divanis, V. S. Verykios
4th Balkan Conference on Informatics (BCI), 2009

Umrr: Towards an enterprise-wide web of models
J Mei, GT Xie, L Zhang, S Liu, RJ Schloss, Y Pan, Y Ni
International Semantic Web Conference (Posters \& Demos), 2009

A Practical Approach for Scalable Conjunctive Query Answering on Acyclic EL+ Knowledge Base
J Mei, S Liu, G Xie, A Kalyanpur, A Fokoue, Y Ni, H Li, Y Pan
8th International Semantic Web Conference, Iswc 2009, Chantilly, Va, USA, October 25-29, 2009, Proceedings, pp. 408, Springer

Making URIs published on Data Web RDF dereferencable
J Mei, G Xie, Y Ni, S Liu, H Li, Y Pan
2009 - wiwiss.fu-berlin.de

MicroRNA-23b cluster microRNAs regulate transforming growth factor-beta/bone morphogenetic protein signaling and liver stem cell differentiation by targeting Smads
C E Rogler, L LeVoci, T Ader, A Massimi, T Tchaikovskaya, R Norel, L E Rogler
Hepatology 50(2), 575--584, Wiley Online Library, 2009

M are better than one: an ensemble-based motif finder and its application to regulatory element prediction
Chen Yanover, Mona Singh, Elena Zaslavsky
Bioinformatics 25(9), 868--874, 2009

Context-aware middleware for pervasive elderly homecare
H.K. Pung, T. Gu, W. Xue, P.P. Palmes, J. Zhu, W.L. Ng, C.W. Tang, N.H. Chung
Selected Areas in Communications, IEEE Journal on 27(4), 510--524, IEEE, 2009

Finding Representative Rules
Warren Davis, Peter Schwarz and Evimaria Terzi.
Proceedings of the 2009 SIAM International Conference on Data Mining

HIWAS: a solution for building Healthcare Information Warehouse
Joshua Hui, Sarah Knoop, Peter Schwarz
American Medical Informatics Association (AMIA) 2009 Annual Symposium

Method for cleansing sequence-based data at query time
L.S. Colby, S.T. Doraiswamy, J. Rao, H. Thakkar, others
US Patent 7,516,128

Automated Segmentation of Routine Clinical Cardiac Magnetic Resonance Imaging for Assessment of Left Ventricular Diastolic DysfunctionCLINICAL PERSPECTIVE
K. Kawaji, N.C.F. Codella, M.R. Prince, C.W. Chu, A. Shakoor, T.M. LaBounty, J.K. Min, R.V. Swaminathan, R.B. Devereux, Y. Wang, others
Circulation: Cardiovascular Imaging 2(6), 476--484, Am Heart Assoc, 2009

Rapid automated quantification of left ventricular ejection fraction with LV-METRIC--a novel segmentation algorithm
N.C.F. Codella, M.D. Cham, R. Wong, C. Chu, K. Healy, M.R. Prince, Y. Wang, J.W. Weinsaft
Journal of Cardiovascular Magnetic Resonance 11(Suppl 1), P117, BioMed Central Ltd, 2009

Graph Construction and b-Matching for Semi-Supervised Learning
T. Jebara, J. Wang, and S.-F. Chang
The 26th International Conference on Machine Learning, 2009

Label Diagnosis through Self Tuning for Web Image Search
J. Wang, Y.-G. Jiang, S.-F. Chang
IEEE Int. Conf. on Computer Vision and Pattern Recognition, 2009

Domain Adaptive Semantic Diffusion for Large Scale Context-Based Video Annotation
Y.-G. Jiang, J. Wang, S.-F. Chang, C.-W. Ngo
The 12th IEEE International Conference on Computer Vision, 2009

Brain State Decoding for Rapid Image Retrieval
J. Wang, E. Pohlmeyer, B. Hanna, Y.-G. Jiang, P. Sajda, S.-F. Chang
ACM Multimedia, 2009


Direct density ratio estimation for large-scale covariate shift adaptation
Yuta Tsuboi, Hisashi Kashima, Shohei Hido, Steffen Bickel, and Masashi Sugiyama
Journal of Information Processing, 2009

Information processing and control
Kiyokuni Kawachiya, Hideaki Komatsu, Takeshi Ogasawara
US Patent 7,519,966

Method and system for searching using contextual data
Ariel Farkash, Ohad Greenshpan, Ksenya Kveler, Dafna Sheinwald
US Patent App. 12/494,302

Method and System for Querying a Health Level 7 (HL7) Data Repository
Ariel Farkash, Yonatan Maman, Amnon Shabo
US Patent App. 12/416,158

DECENTRALIZED LOAD DISTRIBUTION IN AN EVENT-DRIVEN SYSTEM
G.T. Lakshmanan, Y.G. Rabinovich, R.J. Schloss
US Patent App. 12/543,476


FACE RELIGHTING FROM A SINGLE IMAGE
B. VEMURI, A. BARMPOUTIS, A. BENERJEE, R. KUMAR, others
WO Patent 2,009,143,163


A Physical basis for multi-fiber reconstruction from DW-MRI data
R. Kumar, A. Barmpoutis, B.C. Vemuri, P.R. Carney, T.H. Mareci
Biomedical Imaging: From Nano to Macro, 2009. ISBI'09. IEEE International Symposium on, pp. 626--629

Towards the Open Advancement of Question Answering Systems
D Ferrucci, E Nyberg, J Allan, K Barker, E Brown, J Chu-Carroll, A Ciccolo, P Duboue, J Fan, D Gondek, E Hovy, B Katz, A Lally, M McCord, P Morarescu, J. William Murdock, B Porter, J Prager, T Strzalkowski, C Welty, W Zadrozny
IBM Research Report RC24789, IBM Research Report. RC24789 (W0904-093), IBM Research, New York, 2009


Mining statistically significant molecular substructures for efficient molecular classification
Sayan Ranu, Ambuj Singh
Journal of Chemical Information and Modeling, 2009

HIWAS: a solution for building Healthcare Information Warehouse
Joshua Hui, Sarah Knoop, Peter Schwarz
American Medical Informatics Association (AMIA) 2009 Annual Symposium

Guest Editors' Introduction to the Special Section on Award Winning Papers from the IEEE CS Conference on Computer Vision and Pattern Recognition (CVPR)
Kim Boyer, Mubarak Shah, Tanveer Syeda-Mahmood
Pattern Analysis and Machine Intelligence, IEEE Transactions on 31(12), 2113--2114, IEEE, 2009

SPECIAL SECTION ON AWARD-WINNING PAPERS FROM CVPR-Guest Editors' Introduction to the Special Section on Award Winning Papers from the IEEE CS Conference on Computer Vision and Pattern Recognition (CVPR)
K Boyer, M Shah, T Syeda-Mahmood
IEEE Transactions on Pattern Analysis and Machine Intelligence 31(12), 2113, 2009

Proceedings of the First MICCAI international conference on Medical Content-Based Retrieval for Clinical Decision Support
Barbara Caputo, Henning M\"uller, Tanveer Syeda-Mahmood, James S Duncan, Fei Wang
Springer-Verlag, 2009

HESTIA: Historically-Enabled Spatiotemporal Information Anonymity
A. Gkoulalas-Divanis, V.S. Verykios
Data Mining and Management, Nova Science Publishers, 2009

NF-kappa B Activation in Breast Cancer Occurs Via Different Mechanisms in Triple Negative and HER2+ Tumors with Lymphocytic Infiltrate
VR Tadigotla, G Alexe, N Sethi, E Bilal, CL Huang, S Monti, P Tamayo, C DeLisi, G Bhanot, S Ganesan
CANCER RESEARCH, pp. 590S--590S, 2009

Abnormalities of 53BP1 in Basal-Like Breast Cancer.
A Aly, Q Yang, E Bilal, M Yao, G Bhanot, D Toppmeyer, B Haffty, S Ganesan
CANCER RESEARCH, pp. 578S--578S, 2009

A theory of active object localization
Alexander Andreopoulos, John K. Tsotsos
IEEE 12th International Conference on Computer Vision, pp. 903--910, 2009

Diagnostic assay based on hsa-miR-205 expression distinguishes squamous from nonsquamous non--small-cell lung carcinoma
Danit Lebanony, Hila Benjamin, Shlomit Gilad, Meital Ezagouri, Avital Dov, Karin Ashkenazi, Nir Gefen, Shai Izraeli, Gideon Rechavi, Harvey Pass, others
Journal of Clinical Oncology 27(12), 2030--2037, American Society of Clinical Oncology, 2009

Liver cancer-related nucleic acids
Itzhak Bentwich, Amir Avniel, Yael Karov, Ranit Aharonov
US Patent 7,592,441

GENE EXPRESSION SIGNATURE FOR CLASSIFICATION OF CANCERS
Ranit Aharonov, Nitzan Rosenfeld, Shai Rosenwald, Iris Barshack
EP Patent 2,132,327

MicroRNA Biomarkers for Differential Diagnosis of Lung Tumors
M Perelman, S Rosenwald, Y Spector, L Cohen, E Meiri, Z Bentwich, R Aharonov, I Barshack
LABORATORY INVESTIGATION, pp. 359A--359A, 2009

METHODS FOR DISTINGUSHING BETWEEN LUNG SQUAMOUS CARCINOMA AND OTHER NON SMALLCELL LUNG CANCERS
Ranit Aharonov, Nitzan Rosenfeld, Shai Rosenwald, Hila Benjamin
EP Patent 2,126,116

MicroRNA-based Assay for Diagnosing Tumor Tissue Origin
S Rosenwald, I Barshak, D Lebanony, H Gibory, L Cohen, Y Goren, I Leizerman, D Nonaka, A Tobar, Z Bentwich, others
LABORATORY INVESTIGATION, pp. 375A--375A, 2009

MicroRNA-based assay for differential diagnosis of squamous from non-squamous non-small cell lung carcinoma
D Lebanony, H Benjamin, S Gilad, K Ashkenazi, D Nonaka, M Feinmesser, N Rosenfeld, A Chajut, D Cohen, R Aharonov
J Clin Oncol (Meeting Abstracts) 27(15S), 11069, 2009

Diagnostic test based on hsa-miR-205 expression differentiates squamous from non-squamous non small cell lung carcinoma
Danit Lebanony, Hila Benjamin, Shlomit Gilad, Karin Ashkenazi, Daisuke Nonaka, Meroa Feinmesser, Nitzan Rosenfeld, Ayelet Chajut, Dalia Cohen, Ranit Aharonov
JOURNAL OF THORACIC ONCOLOGY, pp. S485--S485, 2009

Identification of tumor tissue origin by a microRNA-based molecular assay
S Rosenwald, H Gibori, S Gilad, L Cohen, I Leizerman, I Barshack, D Nonaka, A Tobar, R Aharonov, N Rosenfeld
J Clin Oncol (Meeting Abstracts) 27(15S), 11036, 2009

METHODS FOR DISTINGUISHING BETWEEN LUNG SQUAMOUS CARCINOMA AND OTHER NON SMALL CELL LUNG CANCERS
Ranit Aharonov, Nitzan Rosenfeld, Shai Rosenwald, Hila Benjamin
US Patent App. 12/551,291

“Search, Show Context, Expand on Demand”: Supporting Large Graph Exploration with Degree-of-Interest
Frank Van Ham, Adam Perer
Visualization and Computer Graphics, IEEE Transactions on 15(6), 953--960, IEEE, 2009

Systems and methods for displaying linked information in a sorted context
Eric Allan Bier, Adam Perer
US Patent 7,562,085

Search, Show Context, Expand on Demand: Supporting Large Graph Exploration with Degree-of-Interest (HTML)
Frank van Ham, Adam Perer
IEEE Transactions on Visualization and Computer Graphics 15(6), 2009

Closed-form jensen-r\'enyi divergence for mixture of Gaussians and applications to group-wise shape registration
Fei Wang, Tanveer Syeda-Mahmood, Baba C Vemuri, David Beymer, Anand Rangarajan
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2009, pp. 648--655, Springer

InEDvance: advanced IT in support of emergency department management
Segev Wasserkrug, Ohad Greenshpan, Yariv N Marmor, Boaz Carmeli, Pnina Vortman, Fuad Basis, Dagan Schwartz, Avishai Mandelbaum
Next Generation Information Technologies and Systems, pp. 86--95, Springer, 2009

Toward simulation-based real-time decision-support systems for emergency departments
Yariv N Marmor, Segev Wasserkrug, Sergey Zeltyn, Yossi Mesika, Ohad Greenshpan, Boaz Carmeli, Avraham Shtub, Avishai Mandelbaum
Simulation Conference (WSC), Proceedings of the 2009 Winter, pp. 2042--2053

Towards Health 2.0: Mashups to the rescue
Ohad Greenshpan, Ksenya Kveler, Boaz Carmeli, Haim Nelken, Pnina Vortman
Next Generation Information Technologies and Systems, pp. 63--72, Springer, 2009

Masking Gateway for Enterprises
S.Porat, B.Carmeli, T.Domany, T.Drory, K.Kveler, A.Melament and H.Nelken
Lecture Notes in Computer Science, pp. 177-191, Springer Berlin / Heidelberg, 2009

Dynamic masking of application displays using OCR technologies
S. Porat B. Carmeli T. Domany T. Drory A. Geva A. Tarem
IBM Journal of Research and Development 53(6), 10--1, IBM, 2009

Minimal delay transmission of short messages
Boaz Carmeli, John Justin Duigenan, Gidon Gershinsky, Haim Nelken, Julian Satran
US Patent 7,613,115

RFID-Based Business Process Transformation: Value Assessment in Hospital Emergency Departments
Yariv Marmor, Segev Wasserkrug, Boaz Carmeli, Ohad Greenshpan, Pnina Vortman, Dagan Schwartz, Kobi Moskovitch, Sara Tzafrir, Fuad Basis, Avraham Shtub, others
Submitted to BPM, 2009

Engineering a synthetic dual-organism system for hydrogen production
Zeev Waks, Pamela A Silver
Applied and environmental microbiology 75(7), 1867--1875, Am Soc Microbiol, 2009

Systems-level engineering of nonfermentative metabolism in yeast
Caleb J Kennedy, Patrick M Boyle, Zeev Waks, Pamela A Silver
Genetics 183(1), 385--397, Genetics Soc America, 2009

Context-based appearance descriptor for 3D human pose estimation from monocular images
Suman Sedai, Mohammed Bennamoun, D Huynh
Digital Image Computing: Techniques and Applications, 2009. DICTA'09., pp. 484--491

Evolutionary fusion of a multi-classifier system for efficient face recognition
Zhan Yu, Mi Young Nam, Suman Sedai, Phill Kyu Rhee
International Journal of Control, Automation and Systems 7(1), 33--40, Springer, 2009

3D human pose estimation from static images using local features and discriminative learning
Suman Sedai, Farid Flitti, Mohammed Bennamoun, Du Huynh
Image Analysis and Recognition, pp. 327--336, Springer, 2009

Mobile applications for the next billions: A social computing application and a perspective on sustainability
Catalina Danis, Mark Bailey, Jim Christensen, Jason Ellis, Thomas Erickson, Robert Farrell, Wendy A Kellogg IBM TJ Watson, others
Strengthening the Role of ICT in Development309, 2009

Identifying Unsafe Routes for Network-Based Trajectory Privacy.
Aris Gkoulalas-Divanis, Vassilios S Verykios, Mohamed F Mokbel
SDM, pp. 942--953, 2009

System and method for automated and adaptive threshold setting to separately control false positive and false negative performance prediction errors
Maayan Goldstein, David Breitgand, John Michael Lake, Ealan Abraham Henis, Onn Shehory


A Framework for Improving Enterprise Services by Mining Customer Edge Data
Preethi Raghavan, Jay Ramanathan, Rajiv Ramnath, Zhe Xu
Enabling Technologies: Infrastructures for Collaborative Enterprises, 2009. WETICE'09. 18th IEEE International Workshops on, pp. 156--161


Method for providing computing-environment control of a resource to be accessed by program code
Roger E Bonsteel, Juilet C Candee, John L Czukkermann, David B Emmes, Steven J Greenspan, Joshua W Knight, Alan M Webb
US Patent 7,584,459

Method and apparatus for preconditioning mobile devices for network and other operations
Chatschik Bisdikian, John Frederick Morar, Edith Helen Stern
US Patent 7,486,930

Method for providing kiosk service offerings in a personal area network
Victor S Moore, Edith H Stern, Berry E Willner
US Patent 7,584,269

Collaborative calendar and workflow management
Patrick J O'Sullivan, Edith H Stern, Robert C Weir, Barry E Willner
US Patent App. 12/579,603

Method, system, and program product for managing data decay
David L Ehnebuske, Edith H Stern
US Patent 7,617,422


Improving graph drawing readability by incorporating readability metrics: A software tool for network analysts, University of Maryland
C Dunne, B Shneiderman
Human-Computer Interaction Lab Tech Report HCIL-2009-13

Improving graph drawing readability by incorporating readability metrics: A software tool for network analysts
Cody Dunne, Ben Shneiderman
University of Maryland, HCIL Tech Report HCIL-2009-13 pp. HCIL-2009-13, University of Maryland
Abstract

First steps to NetViz Nirvana: evaluating social network analysis with NodeXL
Elizabeth M Bonsignore, Cody Dunne, Dana Rotman, Marc Smith, Tony Capone, Derek L Hansen, Ben Shneiderman
Computational Science and Engineering, 2009. CSE'09. International Conference on, pp. 332--339

Generating high-coverage semantic orientation lexicons from overtly marked words and a thesaurus
Saif Mohammad, Cody Dunne, Bonnie Dorr
Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing: Volume 2-Volume 2, pp. 599--608

A framework for semantic link discovery over relational data
Oktie Hassanzadeh, Anastasios Kementsietsidis, Lipyeow Lim, Ren\'ee J Miller, Min Wang
Proceedings of the 18th ACM conference on Information and knowledge management, pp. 1027--1036, 2009

Probabilistic pairwise markov models: Application to prostate cancer detection
James Monaco, John E Tomaszewski, Michael D Feldman, Mehdi Moradi, Parvin Mousavi, Alexander Boag, Chris Davidson, Purang Abolmaesumi, Anant Madabhushi
SPIE Medical Imaging, pp. 725903--725903, 2009

Vibro-elastography for visualization of the prostate region: Method evaluation
Seyedeh Sara Mahdavi, Mehdi Moradi, Xu Wen, William J Morris, Septimiu E Salcudean
Medical Image Computing and Computer-Assisted Intervention--MICCAI 2009, pp. 339--347, Springer

Automated detection of prostate cancer using wavelet transform features of ultrasound RF time series
Mohammad Aboofazeli, Purang Abolmaesumi, Mehdi Moradi, Eric Sauerbrei, Robert Siemens, Alexander Boag, Parvin Mousavi
SPIE Medical Imaging, pp. 72603J--72603J, 2009

Ultrasound elastography--an image guidance tool for prostate brachytherapy
Septimiu E Salcudean, Xu Wen, Seyedeh Sara Mahdavi, Mehdi Moradi, J William Morris, Ingrid Spadinger
Brachytherapy 8(2), 125--126, Elsevier, 2009

Preliminary results of an ultrasound segmentation method based on statistical unit-root test of b-scan radial intensity profiles
Mehdi Moradi, Julian Guerrero, Robert Rohling, Septimiu E Salcudean
Ultrasonics Symposium (IUS), 2009 IEEE International, pp. 1--4

Tissue typing with ultrasound RF time series: Phantom studies
Mehdi Moradi, Parvin Mousavi, Robert Rohling, Purang Abolmaesumi
SPIE Medical Imaging, pp. 726516--726516, 2009

Free water elimination and mapping from diffusion MRI
Ofer Pasternak, Nir Sochen, Yaniv Gur, Nathan Intrator, Yaniv Assaf
Magnetic Resonance in Medicine 62(3), 717--730, Wiley Online Library, 2009

System and method for non intrusive monitoring of “at-risk” individuals
Edith Stern, Barry E Willner
US Patent 7,522,057

Cluster analysis and classification of heart sounds
Guy Amit, Noam Gavriely, Nathan Intrator
Biomedical Signal Processing and Control 4(1), 26--36, Elsevier, 2009

Respiratory modulation of heart sound morphology
Guy Amit, Khuloud Shukha, Noam Gavriely, Nathan Intrator
American Journal of Physiology-Heart and Circulatory Physiology 296(3), H796--H805, Am Physiological Soc, 2009

CoXCS: a coevolutionary learning classifier based on feature space partitioning
M Abedini, M Kirley
AI 2009: Advances in Artificial Intelligence, 360--369, Springer


2008

Pulmonary gas exchange in anatomically-based models of the lung
Swan, Annalisa and Hunter, Peter and Tawhai, Merryn
Integration in Respiratory Control, pp. 184--189, Springer, 2008
Abstract

Implantable insulin pump, the first OLED TV, measuring without a ruler...
Maria Ebling, Mark Corner
Pervasive Computing, IEEE 7(1), 8--9, IEEE, 2008





Method for efficient data transformation
S COHEN
US Patent 8,180,809

Preservation DataStores: New storage paradigm for preservation environments
S Rabinovici-Cohen, M Factor, D Naor, L Ramati, P Reshef, S Ronen, J Satran, D Giaretta
IBM Journal of Research and Development 52(4-5): 389-400, 2008

Determining significance of pairwise co-occurrences of events in bursty sequences
N Haiminen, H Mannila, E Terzi
BMC bioinformatics 9(1), 336, BioMed Central Ltd, 2008

Algorithms for unimodal segmentation with applications to unimodality detection
N Haiminen, A Gionis, K Laasonen
Knowledge and Information Systems 14(1), 39--57, Springer, 2008



METHOD AND APPARATUS FOR INFORMATION BOOSTING IN RELATED BUT DISCONNECTED DATABASES
J Hu, A Mojsilovic, A Radovanovic, M S Squillante
US Patent App. 12/014,414


Scalable tensor decompositions for multi-aspect data mining
T G Kolda, J Sun
Data Mining, 2008, pp. 363--372

Incremental pattern discovery on streams, graphs and tensors
J Sun
ACM SIGKDD Explorations Newsletter 10(2), 28--29, ACM, 2008


Bayesian tensor approach for 3-D face modeling
D Tao, M Song, X Li, J Shen, J Sun, X Wu, C Faloutsos, S J Maybank
Neural Networks, 2008, pp. 1397--1410, IEEE

Probabilistic tensor analysis with Akaike and Bayesian information criteria
D Tao, J Sun, X Wu, X Li, J Shen, S Maybank, C Faloutsos
Neural Information Processing, pp. 791--801, 2008

Colibri: fast mining of large static and dynamic graphs
H Tong, S Papadimitriou, J Sun, P S Yu, C Faloutsos
Proceeding of the 14th ACM SIGKDD international conference on Knowledge discovery and data mining, pp. 686--694, 2008

Clustered subset selection and its applications on it service metrics
C Boutsidis, J Sun, N Anerousis
Proceeding of the 17th ACM conference on Information and knowledge management, pp. 599--608, 2008

Scoop: Automated social recommendation in enterprise process management
H Qu, J Sun, H T Jamjoom
Services Computing, 2008, pp. 101--108

Hierarchical, parameter-free community discovery
S Papadimitriou, J Sun, C Faloutsos, P Yu
Machine Learning and Knowledge Discovery in Databases, 170--187, Springer, 2008

Less is more: Sparse graph mining with compact matrix decomposition
J Sun, Y Xie, H Zhang, C Faloutsos
Statistical Analysis and Data Mining 1(1), 6--22, Wiley Online Library, 2008

Two heads better than one: pattern discovery in time-evolving multi-aspect data
J Sun, C E Tsourakakis, E Hoke, C Faloutsos, T Eliassi-Rad
Data Mining and Knowledge Discovery 17(1), 111--128, Springer, 2008


Data scaling in remote health monitoring systems
Y T Peng, D M Sow
Circuits and Systems, 2008, pp. 2042--2045


METHOD OF COLLABORATIVE EVALUATION INFRASTRUCTURE TO ASSESS THE QUALITY OF HEALTHCARE CLNICAL DECISION ACTORS
II John Sidney Davis, A K H Kim, J H Kim, S H Park, D M Sow, Y J Tak, M Wang
US Patent App. 12/132,867

A System to enable Relational Persistence and Semantic Web style access simultaneously for Objects
J Mei, G Xie, S Liu, L Zhang, Y Pan
7th International Semantic Web Conference (ISWC2008)

Supporting ontology-based dynamic property and classification in Websphere metadata server
S Liu, Y Yang, G Xie, C Wang, F Cao, C Dos Santos, B Schloss, Y Pan, K Shank, J Colgrave
The Semantic Web-ISWC 2008, 861--874, Springer

MDS++: Supporting Ontology-based Dynamic Classification in WebSphere Metadata Server
S Liu, Y Yang, G Xie, C Wang, F Cao, C Dos Santos, B Schloss, Y Pan, K Shank, J Colgrave
Citeseer, Citeseer, 2008


Randomization of real-valued matrices for assessing the significance of data mining results
Markus Ojala, Niko Vuokko, Aleksi Kallio, Niina Haiminen, Heikki Mannila
Proc. SIAM Conference on Data Mining, pp. 494-505, 2008

Visualization of large-scale weighted clustered graph: a genetic approach
J. Zhou, Y. Lin, X. Wang
Proceedings of the 23rd national conference on Artificial intelligence-Volume 3, pp. 1838--1839, 2008

Schema matching for context-aware computing
W. Xue, H. Pung, P.P. Palmes, T. Gu
Proceedings of the 10th international conference on Ubiquitous computing, pp. 292--301, 2008

Mold for generating nanostructures, and mold holder unit, WO Patent Application 2008138361
S. Harrer, S. Strobel, S. Luber, G. Scarpa, F. Brunetti, P. Lugli, M. Tornow, G. Abstreiter

Method and Apparatus for Dynamic Introduction of New Attributes into Policies,
M. Devarakonda, et al
Patent 7412503


Archive storage system design for long-term storage of massive amounts of data
PL Bradshaw, KW Brannon, T Clark, K Dahman, S Doraiswamy, L Duyanovich, BL Hillsberg, W Hineman, M Kaczmarski, BJ Klingenberg, others
IBM Journal of Research and Development 52(4.5), 379--388, IBM, 2008

Left Ventricle: Automated Segmentation by Using Myocardial Effusion Threshold Reduction and Intravoxel Computation at MR Imaging1
N.C.F. Codella, J.W. Weinsaft, M.D. Cham, M. Janik, M.R. Prince, Y. Wang
Radiology 248(3), 1004--1012, Radiological Society of North America, 2008

Effects of papillary muscles and trabeculae on left ventricular quantification: increased impact of methodological variability in patients with left ventricular hypertrophy
M. Janik, M.D. Cham, M.I. Ross, Y. Wang, N. Codella, J.K. Min, M.R. Prince, S. Manoushagian, P.M. Okin, R.B. Devereux, others
Journal of hypertension 26(8), 1677, 2008

Left ventricle segmentation using graph searching on intensity and gradient and a priori knowledge (lvGIGA) for short-axis cardiac magnetic resonance imaging
H.Y. Lee, N. Codella, M. Cham, M. Prince, J. Weinsaft, Y. Wang
Journal of Magnetic Resonance Imaging 28(6), 1393--1401, Wiley Online Library, 2008

2030 Established cmr methods for left ventricular quantification differ based on variable exclusion of papillary/trabecular volumes: increased diagnostic impact among patients with left ventricular hypertrophy
J. Matthew, C. Matthew, R. Michael, W. Yi, C. Noel, M. James, M. Shant, O. Peter, D. Richard, W. Jonathan
Journal of Cardiovascular Magnetic Resonance10, 2008

Graph Transduction via Alternating Minimization
J. Wang, T. Jebara, and S.-F. Chang
The 25th International Conference on Machine Learning, 2008

Active Microscopic Cellular Image Annotation by Superposable Graph Transduction with Imbalanced Labels
J. Wang, S.-F. Chang, X. Zhou, S. T. C. Wong
IEEE Int. Conf. on Computer Vision and Pattern Recognition, 2008