Computational Genomics       

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Computational Genomics - Patents


Please use the United States Patent & Trademark Office (USPTO) databases to download full text of the following.

   

2019

 
Algebraic phasing of polyploids . L. Parida, F. Utro, US 10176296, 2019.

2018

 
Feature selection for efficient epistasis modeling for phenotype prediction . D. Haws, D. He, L. Parida, US 10102333, 2018.
 
Stable genes in comparative transcriptomics . N. Haiminen, L. Parida, US 10102336, 2018.
 
Positive Operational Taxonomic unit identification in metagenomics. N. Haiminen, L. Parida, F. Utro, US 2018/0365374, 2018.
 
Analyzign metagenomics data. N. Haiminen, L. Parida, US 2018/0268048, 2018.

2017

 
Relevancy assessment and visualization of biological pathways . B. Carmeli, B. Erhan, T. Koyama, K. Rhrissorrakrai, A. Royyuru, F. Utro, Z. Waks , US 2016/0283608, 2017.
 
Estimating multiple parents from a matrix of f1 hybrid progeny . L. Parida, F. Utro, US US 2017/0124251, 2017.
 
Metagenome mapping. N. Haiminen, L. Parida, US 2017/0206309, 2017.
 
Systems and methods for fitting LD distributions at genomic scales. N. Haiminen, L. Parida, US 2017/0091384, 2017.
 
Confidence interval estimation of species in metagenomic data. N. Haiminen, L. Parida, R.J. Prill, US 2017/0046475, 2017.

2013

 
Transductive lasso for high-dimensional data regression problems . D. He, L. Parida, I. Rish, US 9135567 B2, 2013.
 
Lossless compression of the enumeration space of founder line crosses . D. Haws, L. Parida, US 9075748 B2, 2013.
 
Tunneling junction to distinguish targeted dna segment . J. Bai, N. Haiminen, L. Parida, G.A. Stolovitzky, US 13/930,578, 2013.
 
Visual analysis of a protein folding process . L. Parida, R. Zhou, US 20080183452, 2013.
 
Method and system for identifying partial order patterns in sequences of data . L. Parida, US 12/102,176, 2013.

2012

 
Efficient sorting of large dimensional data . D. Haws, L. Parida, US 13/745,914, 2012.
 
Precise simulation of progeny derived from recombining parents. N. Haiminen, L. Parida, F. Utro, US 13/675,496, 2012.
 
Quantitative models of multi-allelic multi-loci interactions . D. Haws, L. Parida, US 13/675,475, 2012.
 
Exact haplotype reconstriction of f2 populations . N. Haiminen, L. Parida, F. Utro, US 13/529,476, 2012.

2011

 
Sampling the space of ancestral recombination graphs . L. Parida, A. Javed, US Patent 8527547, 2011.
 
Techniques for linking non-coding and gene-coding deoxyribonucleic acid sequences and applications thereof. I. Rigoutsos, T. Hyunh, A. Tsirigos, A.C. McHardy, K.C. Miranda, US Patent 8065091, 2011.
 
Method for the detection of atypical sequences via generalized compositional methods. A. Tsirigos, I. Rigoutsos, US Patent 7962427, 2011.
 
Significance Measure of Structured Clusters. L. Parida, US Patent 7925447, 2011.
 
System and method for identifying a gapped permutation pattern . L. Parida, US Patent 7917305, 2011.
 
Method and system for comparative genomics . G. M. Landau, L. Parida, O. Weimann, US Patent 7881874, 2011.
 
Methods and Systems for conservative extraction of over-represented extensible motifs. A. Apostolico, M. Comin, L. Parida, US Patent 7865313, 2011.

2010

 
Pattern Discovery Techniques for Determining Maximal Irredundant and Redundant Motifs. L. Parida, USPTO 20100057373, 2010.

2009

 
Method and system for identifying partial order patterns in sequences of data. L. Parida, USPTO 20090259626, 2009.
 
Apparatus, system and method for data compression using irredundant patterns. L. Parida, A. Apostolico, US Patent 7479905, 2009.
 
Topological Motif Discovery. L. Parida, US Patent 7558768, 2009.
 
Apparatus, machine-readable medium, and system for the detection of atypical sequences via generalized compositional methods. A. Tsirigos, I. Rigoutsos, US Patent 7613662, 2009.
 
Method for reconstructing evolutionary data. L. Parida, USPTO 20090132584, 2009.

2008

 
Object classification using an optimized Boolean expression. L. Parida, A. K. Royyuru, US Patent 7428515, 2008.
 
 
Visual analysis of a proteing folding process. L. Parida, R. Zhou, USPTO 20080183452, 2008.
 
Method and apparatus for detecting consensus motifs in data sequences. M. Comin, L. Parida, US 8781754, 2008.
 
Methods and systems for reconstructing genomic common ancestors. L. Parida, USPTO 20080027656, 2008.