Anna Paola Carrieri  Anna Paola Carrieri photo         

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Research Staff Member
IBM Research Laboratory, UK
  

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2017

A colored graph approach to the perfect phylogeny with persistent characters
Bonizzoni P., Carrieri A.P., Della Vedova G., Trucco, G.
Theoretical Computer Science658, 60-73, 2017

Host phenotype prediction from differentially abundant microbes using RoDEO
Carrieri A.P., N. Haiminen N., Parida L.
In: Bracciali A., Caravagna G., Gilbert D., Tagliaferri R. (eds) Computational Intelligence Methods for Bioinformatics and Biostatistics, Lecture Notes in Computer Science, pp. 27-41, Springer, 2017
Abstract

Species-Driven Persistent Phylogeny
Bonizzoni, P., Carrieri, A. P., Della Vedova, G., Rizzi, R., Trucco, G.
Fundamenta Informaticae 154(1-4), 47-63, IOS Press, 2017


2016

Dimension reduction of metagenome data using RoDEO improves phenotype prediction
Carrieri A.P., Haiminen N., Parida L.
In: Computational Intelligence Methods for Bioinformatics and Biostatistics, Proc. 13th International Meeting CIBB, Bracciali A., Gilbert D., MacKenzie G. (Eds.), pp. 51-56, 2016

Sampling ARG of multiple populations under complex configurations of subdivision and admixture
Carrieri, A.P., Utro, F., Parida, L.
Bioinformatics 32(7), 1048-1056, Oxford Univ Press, 2016


2015

Fixed-parameter algorithms for scaffold filling
Bulteau, L., Carrieri, A. P., Dondi, R.
Theoretical Computer Science, pp. 72-83, Elsevier, 2015

Topological Signatures for Population Admixture
Parida L., Utro F., Yorukoglu D., Carrieri A.P., David Kuhn D., Basu S.
In: Research in Computational Molecular Biology, RECOMB 2015, Lecture Notes in Computer Science, Teresa M. Przytycka (Ed.), pp. 261-275, Springer


2014

Algorithms for the Constrained Perfect Phylogeny with Persistent Characters
Bonizzoni, P., Carrieri, A. P., Della Vedova, G., Trucco, G.
arXiv preprint arXiv:1405.7497, 2014

SimRA: Rapid & Accurate Simulation of Populations based on Random-Graph Models of ARG
Carrieri A.P., Parida L.
Poster: RECOMB-CG, Cold Spring Harbor (NY) , 2014

Fixed-Parameter Algorithms for Scaffold Filling
Bulteau, L., Carrieri, A.P., Dondi, R.
In: Proc. Third International Symposium on Combinatorial Optimization, ISCO 2014, Lisbon, Portugal, Lecture Notes in Computer Science, P. Fouilhoux, L. E. Neves Gouveia, A. Ridha Mahjoub, V. T. Paschos (Eds), pp. 137-148, Springer

Explaining Evolution via Constrained Persistent Perfect Phylogeny
Bonizzoni P., Carrieri A.P., Della Vedova G., Trucco G.
BMC Genomics 15(6), 2014


2013

When and how the perfect phylogeny model explains evolution
Bonizzoni, P., Carrieri, A. P., Della Vedova, G., Dondi, R., Przytycka, T. M.
Discrete and Topological Models in Molecular Biology, Jonoska N., Saito M. (Eds), pp. 67-83, Springer, 2013


2012

An in-silico framework for comparing and validating transcripts predicted from single and paired-end reads
Beretta S., Bonizzoni P., Carrieri A.P., Della Vedova G., Pirola Y., Pesole G., Picardi E., Rizzi R.
Poster: Next Generation Sequencing Workshop, Bari (Italy) , 2012