Enrico Siragusa  Enrico Siragusa photo         

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Postdoctoral Researcher
Thomas J. Watson Research Center, Yorktown Heights, NY USA


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Linear time algorithms to construct populations fitting multiple constraint distributions at genomic scales
Enrico Siragusa, Niina Haiminen, Filippo Utro, Laxmi Parida
IEEE/ACM Transactions on Computational Biology and Bioinformatics, IEEE, 2017

Full-Text Indexes for High-Throughput Sequencing
David Weese, Enrico Siragusa
Algorithms for Next-Generation Sequencing Data, pp. 41--75, Springer, Cham, 2017

The SeqAn C++ template library for efficient sequence analysis: A resource for programmers
Knut Reinert, Temesgen Hailemariam Dadi, Marcel Ehrhardt, Hannes Hauswedell, Svenja Mehringer, Ren\'e Rahn, Jongkyu Kim, Christopher Pockrandt, J\"org Winkler, Enrico Siragusa, others
Journal of Biotechnology261, 157--168, Elsevier, 2017


Next-generation diagnostics and disease-gene discovery with the Exomiser
Damian Smedley, Julius OB Jacobsen, Marten J\"ager, Sebastian K\"ohler, Manuel Holtgrewe, Max Schubach, Enrico Siragusa, Tomasz Zemojtel, Orion J Buske, Nicole L Washington, others
Nature protocols 10(12), 2004--2015, Nature Publishing Group

Approximate string matching for high-throughput sequencing
Enrico Siragusa
Ph.D. Thesis, 2015


State-of-the-art in String Similarity Search and Join
Sebastian Wandelt, Dong Deng, Stefan Gerdjikov, Shashwat Mishra, Petar Mitankin, Manish Patil, Enrico Siragusa, Alexander Tiskin, Wei Wang, Jiaying Wang, others
ACM SIGMOD Record 43(1), 64--76, ACM, 2014


Fast and accurate read mapping with approximate seeds and multiple backtracking
Enrico Siragusa, David Weese, Knut Reinert
Nucleic acids research 41(7), e78--e78, Oxford Univ Press, 2013

Scalable string similarity search/join with approximate seeds and multiple backtracking
Enrico Siragusa, David Weese, Knut Reinert
Proceedings of the Joint EDBT/ICDT 2013 Workshops, pp. 370--374


A basic analysis toolkit for biological sequences
R Giancarlo, A Siragusa, E Siragusa, F Utro
Algorithms for Molecular Biology 2(1), 10, 2007