María Rodríguez Martínez  María Rodríguez Martínez photo         

contact information

Research Staff Member
Zurich Research Laboratory, Zurich, Switzerland


Professional Associations

Professional Associations:  International Society for Computation Biology


PIMKL: Pathway Induced Multiple Kernel Learning
Matteo Manica, Joris Cadow, Roland Mathis, María Rodríguez-Martínez
arXiv preprint arXiv:1803.11274, 2018

The number of titrated microRNA species dictates ceRNA regulation
Hua-Sheng Chiu, María Rodríguez-Martínez, Elena V Komissarova, David Llobet-Navas, Mukesh Bansal, Evan O Paull, Jose Silva, Xuerui Yang, Pavel Sumazin, Andrea Califano
Nucleic Acids Research, 2018

INtERAcT: Interaction Network Inference from Vector Representations of Words
Matteo Manica, Roland Mathis, María Rodríguez-Martínez
arXiv preprint arXiv:1801.03011 , 2018

CellCycleTRACER accounts for cell cycle and volume in mass cytometry data
Maria Anna Rapsomaniki, Xiao-Kang Lun, Stefan Woerner, Marco Laumanns, Bernd Bodenmiller, María Rodríguez-Martínez
Nature Communications9, 2018


Inferring clonal composition from multiple tumor biopsies
M. Manica, P. Chouvarine, R. Mathis, U. Wagner, K. Oehl, K. Saba, L. De Vargas Roditi, A. N Pati, M. Rodríguez-Martínez, P. J. Wild, P. Sumazin
arXiv preprint arXiv:1701.07940, 2017

High-throughput validation of ceRNA regulatory networks
Hua-Sheng Chiu, María Rodríguez-Martínez, Mukesh Bansal, Aravind Subramanian, Todd R Golub, Xuerui Yang, Pavel Sumazin, and Andrea Califano.
BMC genomics 18(1), 418, BioMed Central, 2017


Depletion of FOXM1 via MET targeting underlies establishment of a DNA damage-induced senescence program in gastric cancer
Paola Francica, Lluis Nisa, Daniel M Aebersold, Rupert Langer, Friedhelm Bladt, Andree Blaukat, Deborah Stroka, María Rodríguez-Martínez, Yitzhak Zimmer and Michaela Medova
Clinical Cancer Research, clincanres-2987, AACR, 2016

Marginalized Continuous Time Bayesian Networks for Network Reconstruction from Incomplete Observations
Lukas Studer, Loic Pauleve, Christoph Zechner, Matthias Reumann, María Rodríguez-Martínez and Heinz Koeppl
AAAI Conference on Artificial Intelligence, 2016


Elucidating compound mechanism of action by network perturbation analysis
Jung Hoon Woo, Yishai Shimoni, Wan Seok Yang, Prem Subramaniam, Archana Iyer, Paola Nicoletti, María Rodríguez-Martínez, Gonzalo López, Michela Mattioli, Ronald Realubit, Charles Karan, Brent R. Stockwell, Mukesh Bansal and And
Cell 162(2), 441-451, 2015


Observational Consequences of a Landscape: Epilogue
Ben Freivogel, Matthew Kleban, María Rodríguez-Martínez, Leonard Susskind
Cosmology and Nongalactic Astrophysics, 2014


Highly conserved ceRNA regulatory interactions cooperate with genomic variability to modulate drivers of tumorigenesis
Hua-Sheng Chiu, María Rodríguez-Martínez, David Llobet-Navas, Aravind Subramanian, Archana Iyer, Yishai Shimoni, Mukesh Bansal, Todd R. Golub, Jose Silva, Xuerui Yang, Pavel Sumazin, Andrea Califano.
Proceedings: AACR 104th Annual Meeting, 2013

GWAS next generation: identifying mechanisms of action in association studies
María Rodríguez-Martínez, Paola Nicoletti, Gonzalo López, Mukesh Bansal, Yishai Shimoni, Andrea Califano
Regulatory Genomics Special Interest Group (RegGen SIG) Program, 2013


Quantitative modeling of the terminal differentiation of B cells and mechanisms of lymphomagenesis
M. Rodríguez-Martínez, A. Corradin, U. Klein, M.J. Alvarez, G.M. Toffolo, B. di Camillo, A. Califano, G.A. Stolovitzky
Proceedings of the National Academy of Sciences 109(7), 2672-2677, 2012


Quorum percolation in living neural networks
Or Cohen, Anna Keselman, Elisha Moses, María Rodríguez-Martínez, Jordi Soriano, Tsvi Tlusty
EPL (Europhysics Letters) 89(1), 18008, IOP Publishing, 2010

Messenger RNA fluctuations and regulatory RNAs shape the dynamics of a negative feedback loop
María Rodríguez Martínez, Jordi Soriano, Tsvi Tlusty, Yitzhak Pilpel, Itay Furman
Physical Review E 81(3), 031924, APS, 2010


Development of input connections in neural cultures
Jordi Soriano, María Rodríguez-Martínez, Tsvi Tlusty, Elisha Moses
Proceedings of the National Academy of Sciences 105(37), 13758-13763, 2008

Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation
Ophir Shalem, Orna Dahan, Michal Levo, María Rodríguez-Martínez, Itay Furman, Eran Segal, Yitzhak Pilpel
Molecular Systems Biology 4(1), 223, 2008


Input-output robustness in simple bacterial signaling systems
Guy Shinar, Ron Milo, María Rodríguez Martínez, Uri Alon
Proceedings of the National Academy of Sciences 104(50), 19931-19935, 2007


Observational consequences of a landscape
Ben Freivogel, Matthew Kleban, María Rodríguez Martínez, Leonard Susskind
Journal of High Energy Physics0603, 039, 2006

Constraining Lorentz violations with gamma-ray bursts
María Rodríguez Martínez, Tsvi Piran
Journal of Cosmology and Astroparticle Physics604, 6, 2006

Gamma-ray bursts and new physics
Tsvi Piran, Dafne Guetta, María Rodríguez Martínez
Progress of Theoretical Physics Supplement163, 23-37, 2006

GRB 051221A and tests of Lorentz symmetry
María Rodríguez Martínez, Tsvi Piran, Yonatan Oren
Journal of Cosmology and Astroparticle Physics0605, 017, 2006


Defining perturbations on submanifolds
Karim A Malik, María Rodríguez-Martínez, David Langlois
Physical Review D 68(12), 123517, APS, 2003


Fluctuating brane in a dilatonic bulk
Philippe Brax, David Langlois, María Rodríguez-Martínez
Phys.Rev. D67, 104022, 2002

Brane Cosmology with a Bulk Scalar Field
María Rodríguez-Martínez
International Journal of Modern Physics A 17(20), 2774-2774, World Scientific, 2002

Cosmology of a brane radiating gravitons into the extra dimension
David Langlois, Lorenzo Sorbo, María Rodríguez-Martínez
Physical Review Letters 89(17), 171301, APS, 2002


Brane cosmology with a bulk scalar field
David Langlois and María Rodríguez-Martínez
Phys. Rev. D64, 123507, 2001