Matteo Manica  Matteo Manica photo         

contact information

Research Staff Member in Cognitive Health Care and Life Sciences
Zurich Research Laboratory, Zurich, Switzerland
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Professional Associations

Professional Associations:  International Society for Computational Biology


2019

Accelerated analysis of Boolean gene regulatory networks via reconfigurable hardware
M. Manica, R. Polig, M. Purandare, R. Mathis, C. Hagleitner, M. Rodriguez-Martinez
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 1-1, 2019

An Information Extraction and Knowledge Graph Platform for Accelerating Biochemical Discoveries
Matteo Manica, Christoph Auer, Valery Weber, Federico Zipoli, Michele Dolfi, Peter Staar, Teodoro Laino, Costas Bekas, Akihiro Fujita, Hiroki Toda, Shuichi Hirose, Yasumitsu Orii
Workshop on Applied Data Science for Healthcare at KDD, 2019

Towards Explainable Anticancer Compound Sensitivity Prediction via Multimodal Attention-based Convolutional Encoders
Matteo Manica, Ali Oskooei, Jannis Born, Vigneshwari Subramanian, Julio Saez-Rodriguez, Maria Rodriguez-Martinez
Workshop on Computational Biology ICML, 2019

PIMKL: Pathway-Induced Multiple Kernel Learning
Matteo Manica, Joris Cadow, Roland Mathis, Maria Rodriguez-Martinez
npj Systems Biology and Applications 5(1), 8, Nature Publishing Group, 2019

NeuNetS: An Automated Synthesis Engine for Neural Network Design
Atin Sood, Benjamin Elder, Benjamin Herta, Chao Xue, Costas Bekas, A. Cristiano I. Malossi, Debashish Saha, Florian Scheidegger, Ganesh Venkataraman, Gegi Thomas, Giovanni Mariani, Hendrik Strobelt, Horst Samulowitz, Martin Wistuba, Matteo Manica, Mihir Choudhury, Rong Yan, Roxana Istrate, Ruchir Puri, Tejaswini Pedapati
arXiv preprint arXiv:1901.06261, 2019

Context-specific interaction networks from vector representation of words
Matteo Manica, Roland Mathis, Joris Cadow, Maria Rodriguez-Martinez
Nature Machine Intelligence 1(4), 181--190, Nature Publishing Group, 2019


2018


PaccMann: Prediction of anticancer compound sensitivity with multi-modal attention-based neural networks
Ali Oskooei, Jannis Born, Matteo Manica, Vigneshwari Subramanian, Julio Saez-Rodriguez, Maria Rodriguez-Martinez
Workshop on Machine Learning for Molecule and Materials NeurIPS, 2018


Mixed-precision in-memory computing
Manuel Le Gallo, Abu Sebastian, Roland Mathis, Matteo Manica, Tomas Tuma, Costas Bekas, Alessandro Curioni, Evangelos Eleftheriou
Nature Electronics, 2018


2017

Inferring clonal composition from multiple tumor biopsies
Matteo Manica, Philippe Chouvarine, Roland Mathis, Ulrich Wagner, Kathrin Oehl, Karim Saba, Laura De Vargas Roditi, Arati N Pati, Maria Rodriguez-Martinez, Peter J Wild, others
arXiv preprint arXiv:1701.07940, 2017


2013