Laxmi Parida  Laxmi Parida photo         

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ISCB Fellow, IBM Fellow, Master Inventor, Manager, Computational Genomics Group
Thomas J. Watson Research Center, Yorktown Heights, NY USA
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Professional Associations

Professional Associations:  ACM  |  International Society for Computational Biology  |  Society for Industrial and Applied Mathematics

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More information:  Group page


Patent Activities

Please use the United States Patent & Trademark Office (USPTO) databases to download full text of the following.

  1. EXACT HAPLOTYPE RECONSTRUCTION OF F2 POPULATIONS, U.S. Patent 10,460,832, October 29, 2019.
  2. Algebraic phasing of polyploids, 10169531, Jan 1, 2019.
  3. TRANSDUCTIVE FEATURE SELECTION WITH MAXIMUM-RELEVANCY AND MINIMUM-REDUNDANCY CRITERIA, US 9471881, Oct 18, 2016.
  4. Assembly Error Detection, U.S. Serial No. CN ZL201210020103.5, Jan 6, 2016
  5. IMPROVED METAGENOME MAPPING, US 15/000203, 2016.
  6. CONFIDENCE INTERVAL ESTIMATION OF SPECIES IN METAGENOMIC DATA, US 14/950858, 2015.
  7. ESTIMATING MULTIPLE PARENTS FROM A MATRIX OF F1 HYBRID PROGENY, US 14/930840, 2015.
  8. SYSTEMS AND METHODS FOR FITTING LD DISTRIBUTIONS AT GENOMIC SCALES, US Patent I780690, Sept 28, 2015.
  9. TLASSO: Transductive Lasso for High Dimensional Data Regression Problems, US Patent 9135567, Sept 15, 2015.
  10. LOSSLESS COMPRESSION OF THE ENUMERATION SPACE OF FOUNDER LINE CROSSES US Patent 9041566, May 26, 2015.
  11. EFFICIENT SORTING OF LARGE DIMENSIONAL DATA, US Patent 9020958,Apr 28, 2015.
  12. METHOD AND APPARATUS FOR DETECTING CONSENSUS MOTIFS IN DATA SEQUENCES, US Patent 8781754, July 15, 2014.
  13. Feature Selection for Efficient Epistasis Modeling for Phenotype Prediction, US Patent DE 102014200158, May 19, 2014.
  14. Methods and systems for reconstructing genomic common ancestors, US Patent 8700334, April 15, 2014.
  15. Methods for reconstructing evolutionary data, US Patent 8645074, Feb 14, 2014.
  16. Tunneling Junction To Distinguish Targeted DNA Segment, U.S. Serial No. 13930578, June 28, 2013.
  17. VISUAL ANALYSIS OF A PROTEIN FOLDING PROCESS, US Patent 8423339, April 16, 2013.
  18. DMRMR: Dynamic Programming Algorithm to Improve the Efficiency of mRMR, U.S. Serial No. 13/745,923, Jan 21, 2013.
  19. EMRMR: Epistasis Model based on mRMR for Phenotype Prediction, U.S. Serial No. 13/745,914, Jan 21, 2013.
  20. HMRMR: A Hill Climbing Algorithm to Improve the Accuracy of mRMR, U.S. Serial No. 13/745,909, Jan 21, 2013.
  21. METHOD AND SYSTEM FOR IDENTIFYING PARTIAL ORDER PATTERNS IN SEQUENCES OF DATA, US Patent 8355878, Jan 15, 2013.
  22. Stable Genes in Comparative Transcriptomics, U.S. Serial No. US 13/713970, Dec 13, 2012.
  23. PRECISE SIMULATION OF PROGENY DERIVED FROM RECOMBINING PARENTS, U.S. Serial No. 13/675,496 , Nov 13, 2012.
  24. QUANTITATIVE MODELS OF MULTI-ALLELIC MULTI-LOCI INTERACTIONS, U.S. Serial No. 13/675,475, Nov 13, 2012.
  25. SAMPLING THE SPACE OF ANCESTRAL RECOMBINATION GRAPHS, U.S. Serial No. 13/169,824, June 27, 2011.
  26. RANK NORMALIZATION FOR DIFFERENTIAL EXPRESSION ANALYSIS OF TRANSCRIPTOME SEQUENCING DATA, U.S. Serial No. 13/459529, April 30, 2012.
  27. Significance Measure of Structured Clusters, US Patent 7925447, April 12, 2011.
  28. SYSTEM AND METHOD FOR IDENTIFYING A GAPPED PERMUTATION PATTERN, US Patent 7917305, March 29, 2011
  29. METHOD AND SYSTEM FOR COMPARATIVE GENOMICS, US Patent 7881874, Feb 1, 2011
  30. Methods and Systems for conservative extraction of over-represented extensible motifs, US Patent 7,865,313, Jan 4, 2011
  31. Pattern Discovery Techniques for Determining Maximal Irredundant and Redundant Motifs, USPTO 20100057373, March 04, 2010.
  32. Topological Motif Discovery, US Patent 7,558,768, July 7, 2009.
  33. METHOD FOR RECONSTRUCTING EVOLUTIONARY DATA, USPTO 20090132584, May 21, 2009.
  34. Apparatus, system and method for data compression using irredundant patterns, US Patent 7,479,905, Jan 20, 2009.
  35. OBJECT CLASSIFICATION USING AN OPTIMIZED BOOLEAN EXPRESSION, U.S. Patent 7428515, Sep 23, 2008.
  36. METHOD AND APPARATUS FOR DETECTING CONSENSUS MOTIFS IN DATA SEQUENCES, USPTO 20080167850, July 10, 2008.
  37. Method and system for clustering objects and finding prime redescriptors for the clusters, USPTO 0070213957, Sept 13, 2007.
  38. Method and structure for lossy compression of continuous data with extensible motifs, U.S. Patent 7259701, August 21, 2007.
  39. System and Method for Encoding and Detecting Extensible Patterns, U.S. Patent 7203680, April 10, 2007.
  40. Method and system for protein folding trajectory analysis using patterned clusters, USPTO 20060069515, March 30, 2006.
  41. Fuzzy bi-clusters on multi-feature data, USPTO 20060184459, Aug 17, 2006.
  42. Discovering Permutation Patterns, USPTO 20050060321, March 17, 2005.
  43. Methods and Apparatus for Performing Pattern Discovery and Generation with respect to Data Sequences, U.S. Patent 6571230, May 27, 2003.
  44. Multiple Sequence Alignment System and Method, U.S. Patent 6205444B1, March 20, 2001.