Cellular Engineering       

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Cellular Engineering - People


Simone Bianco (Research Staff Member, PI): Simone's expertise is in dynamical systems theory and its application to problems of biological relevance. He is interested in understanding how evolution shapes the principles of self-assembly of any living system, from viruses to bacteria, to single cell and multicellular organisms.  

 

Tom Zimmerman (Research Staff Member): Tom is a researcher and master inventor at IBM Almaden. He is interested in signal processing, machine learning, human/data interaction and visualization. Tom's patent cover a wealth of technologies, from position tracking to user input, wireless communication, biometrics and encryption. In the Cellular Engineering project, Tom is responsible for new hardware and software for visualization of large swimming microscopic organisms, as well as IBM education and outreach coordinator.  

 

Ignacio Terrizzano (Software Engineer): Ignacio is an expert in collaborative architectures and software integration. He is responsible for developing a Center for Cellular Construction Labbook, a customized version of the IBM collaborative notebook platform.   

 

Sujoy Biswas (Postdoctoral Researcher): Sujoy Biswas has interest and expertise in computer vision and machine learning with a specific research interest in solving large scale visual recognition problems. As part of the Cellular Engineering group at IBM Research, Sujoy studies how robust and scalable visual recognition algorithms can distill the high-content and high-throughput microscopy into novel biological insights.

  

Elsa Rousseau (Postdoctoral Researcher): Elsa is a mathematical and computational biologist. She has a PhD in Computational Biology, and has worked on disease dynamics of plant viruses. In the Cellular Engineering project, Elsa is responsible for modeling cell dynamics and morphology in different environmental and genetic conditions. 

  

Vito Paolo Pastore (Postdoctoral Researcher): Vito is a bioengineer, with a background in analysis of networks of neurons. In the Cellular Engineering project, Vito models plankton dynamic using deep learning.

 

Cecelia Brown (summer intern): Cecelia is a graduate student in Blake Riggs's lab at SFSU. Her summer project is about predicting cellular modifications in stentors using machine learning and a drop microscope

 

Adrienna Bingham (Summer intern): Adrienna is a graduate student at the college of William and Mary, in Leah Shaw's lab. She works on infectious disease competition models in multipatch systems.

 

James Gerh (Summer intern): James is a graduate student in Diana Chu's lab at SFSU. He is modeling the spindle dynamic in c. Elegans.

 

Mayara Bonani (exchange student): Mayara is an undergraduate student from the University of Sao Paolo, Brazil. She is an engineer and she is working on hardware/software for Tom's lensless microscope.

 

Sita Chandrasekaran (visiting student): Sita is a student in Ray Equerra's lab. She is working on classifying plankton shapes using deep learning.

 

Tommaso Martin (exchange student): Tommaso is graduate students at the University of Genova. He is a systems engineering, working on a software infrastructure for the data obtained using Tom's lensless microscope.

 

Julie Pope (Program Manager): Julie is a senior program manager at IBM. She is responsible for everything finance and reporting.

 

 

Affiliated Members

Mary Roth, Software Engineer, LabBook team lead

Barbara Jones, Theoretical Physicist, Science and Solution

Nimrod Megiddo, Theoretical Computer Scientist, CS Theory group

Aminat Adebiyi, IoT postdoc, Science and Solution

Raphael Arar, Designer and Researcher

 

Past Members

Silvia Peschiera, IBM Italy researcher and university relationship representative. Silvia is interested in cloud and collaboration platforms, as well a bioengineering.

Paolo Malavolta, IBM Italy system and software engineer, specialized in cloud infrastructure and research as a service.

Amanda Paulson, 5th year graduate student in Zev Gartner's lab at UCSF. Amanda is interested in how cellular heterogeneity impacts tissue function.

Jacob Kimmel, 2nd year graduate student in Wallace Marshall's lab at UCSF. At IBM Jacob is developing end-to-end deep learning algorithms to track cells under environmental stress.

Chang Chang, physics, Peking University (now postdoc @Philip Cluzel lab, Harvard University)

Garrett Nieddu, mathematics of infectious disease, graduate student with Lora Billings and Eric Forgoston at Montclair State University

Lucrezia Maini, Nanotechnologies master student, from the International Master Degree program (Politecnico di Torino, Grenoble INP-Phelma, EPFL Losanne).

Aritra Chowdury , Computer Science graduate student from Bulent Yener's lab at RPI

 




Recent news

07/31/18

New paper out on Nature Methods on Quanti.us, a novel platform for crowdsourced annotation. The paper contains our new AI algorithm, which is able to efficiently generalize from noisy annotation. (link).

03/06/18

New paper coming out on the Journal of the American Chemical Society, which describes a new synthetic polymer that is able to kill drug resistant cancer cells (link).

03/06/18

Simone publishes a paper on Nature Communications describing a new polymer that is able to kill antimicrobial resistance bacteria (link).

(press release)

10/01/17

Welcome to Cellular Engineering interns Amanda Paulson and Jacob Kimmel!

07/17/17

Congrats to Elsa Rousseau for her recent publication on the Journal of General Virology! (link).

07/07/17

Elsa Rousseau presents her recent work on defective viral particles at the 2017 Ecology and Evolution of Infectious Disease meeting, in Santa Barbara.

06/19/17

Congrats to Sujoy Biswas for his recent publication on the IEEE Transactions on Image Processing! (link).

05/08/17

Simone speaks about viral dynamic at the SIAM Symposium on applications of Dynamical Systems (DS 2017) (abstract here).

05/08/17

Simone publishes an article about Cellular Engineering on www.01net.it (in Italian).

05/05/17

Press release about recent paper about the role of the animal reservoir on the spread of the Ebola virus.

See also:

Healtcare IT News
MedicalXpress
ExecutiveBiz
Clinical Innovation + Technology

04/22/17

Article about Cellular Engineering (and other projects at IBM Almaden) on the Italian newspaper Il Foglio (pdf, in Italian).

02/20/17

Welcome postdoc Elsa Rousseau!

01/16/17

Welcome postdoc Sujoy Biswas!

09/30/16

The Center for Cellular Construction is announced!